View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_105 (Length: 235)
Name: NF20954_high_105
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_105 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 23537717 - 23537502
Alignment:
| Q |
1 |
caataattccatcataggaattgcggcaaatgcttcaaccaaaccagataaaccaaattgtggaataagccaccaaattcttgtaggtgattgaaatgtt |
100 |
Q |
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| T |
23537717 |
caataactccatcataggaattgcggcaaatgcttcgaccaaaccagataaaccaaattgtggaataagccaccaaattcttgtaggtgattgaaatgtt |
23537618 |
T |
|
| Q |
101 |
ccgtgtttcaatgcgttgtcgcggcggcgcacttcaaccagtcctgatacaaccatgccaacaatggaaaaaataattcctattgttattctttgaccaa |
200 |
Q |
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| T |
23537617 |
ccgtgtttcaatgcgttgtcgcgacggcgaacttctactagtcctgacacaaccatgccaagaatggaacaaataattcctattgttattctttgttcaa |
23537518 |
T |
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| Q |
201 |
ttgacaatcttttacc |
216 |
Q |
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||| |||||||||||| |
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| T |
23537517 |
ttgtcaatcttttacc |
23537502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 23543838 - 23543662
Alignment:
| Q |
8 |
tccatcataggaattgcggcaaatgcttcaaccaaaccagataaaccaaattgtggaataagccaccaaattcttgtaggtgattgaaatgttccgtgtt |
107 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||| ||| ||||| |
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| T |
23543838 |
tccatcataggaattgcggcaaatgcttcgaccaaaccagataaaccaaattgtggaacaagccaccaaattcttgtatgtgattcaaaagttttgtgtt |
23543739 |
T |
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| Q |
108 |
tcaatgcgttgtcgcggcggcgcacttcaaccagtcctgatacaaccatgccaacaatggaaaaaataattcctatt |
184 |
Q |
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| T |
23543738 |
tcaatgcgttgctgcgacgacgcacttctactagtccggcaaccaccatagaagcaatggaaaatataattcctatt |
23543662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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