View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_107 (Length: 232)
Name: NF20954_high_107
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_107 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 14414913 - 14414710
Alignment:
| Q |
15 |
agaatatggggccagaaattgcagaagtgcaggatccgaagcggtggttgctacaagaatggaatattctaaagcattcgctttagaattcaaagaaata |
114 |
Q |
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| T |
14414913 |
agaatatggggccagaaattgcagaagtgcaggatccaaagcggtggttgctacaagaatggaatattctaaagcattcgctttagaattcaaagaaata |
14414814 |
T |
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| Q |
115 |
taaattatagtaccaaataattcatctgcctgaatccacatgatg-nnnnnnnntactttattatttaaaaaatttacttaactatgatatgtgttctat |
213 |
Q |
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| T |
14414813 |
taaattatagtaccaaataattcatgtgcctgaatccacatgatgaaaaaaaaatactttattatttaaaaaatttacttaactatgatatgtgttctat |
14414714 |
T |
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| Q |
214 |
aatt |
217 |
Q |
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|||| |
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| T |
14414713 |
aatt |
14414710 |
T |
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Target: scaffold0212 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 15684 - 15766
Alignment:
| Q |
15 |
agaatatggggccagaaattgcagaagtgcaggatccgaagcggtggttgctacaagaatggaatattctaaagcattcgctt |
97 |
Q |
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| T |
15684 |
agaatatggggccagaaattgcagaggtgcaggatccgaagcggtggctgctacaagaatggaatattctaaagcattcgctt |
15766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 36499608 - 36499526
Alignment:
| Q |
15 |
agaatatggggccagaaattgcagaagtgcaggatccgaagcggtggttgctacaagaatggaatattctaaagcattcgctt |
97 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36499608 |
agaatatggggccagaaattgcagaggtgcaggatccgaagcggtggctgctacaagaatggaatattctaaagcattcgctt |
36499526 |
T |
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