View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20954_high_15 (Length: 529)
Name: NF20954_high_15
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 20 - 519
Target Start/End: Original strand, 40059682 - 40060190
Alignment:
| Q |
20 |
tatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40059682 |
tatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttca |
40059781 |
T |
|
| Q |
120 |
tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40059782 |
tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattccggggattaagttccgaactgataatgaaccatttaaggtag |
40059881 |
T |
|
| Q |
220 |
aggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgcta |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40059882 |
aggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgcta |
40059981 |
T |
|
| Q |
320 |
agattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcaggnnnnnnnatcactaaatacaagtattgcgag |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
40059982 |
agattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcaggtttttttatcactaaatacaattatagcgag |
40060081 |
T |
|
| Q |
420 |
tatatttttgtaga-----------taaagtttatatttgttaatgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagacatcga |
508 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40060082 |
tatatttttgtagacatattaaggtcaaagttaatatttgttaatgtgagagtatttgtgc--tctattgccagattgaaaatgagtatggagacatcga |
40060179 |
T |
|
| Q |
509 |
ttcagcctatg |
519 |
Q |
| |
|
||||||||||| |
|
|
| T |
40060180 |
ttcagcctatg |
40060190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 40077764 - 40078129
Alignment:
| Q |
20 |
tatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttca |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||| |||||||||| |||||||| |
|
|
| T |
40077764 |
tatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaactacgggtaaagtttggtcc----tttctgtgtattatttttctgtggtgttca |
40077859 |
T |
|
| Q |
120 |
t--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggt |
217 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40077860 |
tgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggt |
40077959 |
T |
|
| Q |
218 |
agaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgc |
317 |
Q |
| |
|
|| | ||||| | || |||||||||| | | |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
40077960 |
ag-gctaaccttcaccctgttgcttcatgcatttgtccttaaatctgagttcacttgacaggaaactttgtcttcaggccgaaatgaagcgattcaccgc |
40078058 |
T |
|
| Q |
318 |
taagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40078059 |
taagattgtcgatctcatgaagcaagagaaactgtatgcatcacaaggaggacctataattttatctcagg |
40078129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 519
Target Start/End: Original strand, 40085569 - 40086078
Alignment:
| Q |
20 |
tatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttca |
119 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||||||| |
|
|
| T |
40085569 |
tatatgtgcatctccggattggtccatatgtttgttctgaatggaactatgggtaaagtttggt----aatttatgtgtattatatttcgagggtgttca |
40085664 |
T |
|
| Q |
120 |
t--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggt |
217 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40085665 |
tgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggt |
40085764 |
T |
|
| Q |
218 |
agaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgc |
317 |
Q |
| |
|
| || ||||| | | || |||||| | ||||||||||| | ||||||||||||| || |||| |||||||||||| ||||||||| |||||||| | |
|
|
| T |
40085765 |
a-agttaaccttcagtccagtgcttcatgcttttgtccttgga-ctgagttcacttgacaggaaactttgtcttcaggttgaaatgaagcgattcaccac |
40085862 |
T |
|
| Q |
318 |
taagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcaggnnnnnnnatcacta-----aatacaagta |
412 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |
|
|
| T |
40085863 |
taagattgtcgacctcatgaagcaagagaaactgtatgcatcacaaggaggacctataattttatctcaggtttttttatcatgaaatacaatacaagta |
40085962 |
T |
|
| Q |
413 |
ttgcgagtatatttttgtagat---------aaagtttatatttgttaatgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagac |
503 |
Q |
| |
|
| | | |||||| ||| |||| ||||||||||||||||||||||||||| |||||| |||||| || ||||| |||||||||||||||||| |
|
|
| T |
40085963 |
tagttaatatattcttgaagatattaaggtcaaagtttatatttgttaatgtgagagtgtttgtgatttctaatgacagatagaaaatgagtatggagac |
40086062 |
T |
|
| Q |
504 |
atcgattcagcctatg |
519 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
40086063 |
atcgattcagcctatg |
40086078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 442 - 505
Target Start/End: Original strand, 40078205 - 40078268
Alignment:
| Q |
442 |
atatttgttaatgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagacat |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
40078205 |
atatttgttaatgtgagagtatttgtgctttctaatgccagattgaaaatgagtatggaaacat |
40078268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 35052758 - 35052652
Alignment:
| Q |
120 |
tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag |
219 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||| ||| || |||||||||||||||||| |
|
|
| T |
35052758 |
tctaattgagggctttaacttcttaacagtggttaacctctttggattcacttcattccagggattaggttccaaacagacaatgaaccatttaaggta- |
35052660 |
T |
|
| Q |
220 |
aggtaacc |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
35052659 |
aggtaacc |
35052652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 12735579 - 12735460
Alignment:
| Q |
101 |
tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg |
198 |
Q |
| |
|
|||||| ||||||| ||||| ||||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||| || | |
|
|
| T |
12735579 |
tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag |
12735480 |
T |
|
| Q |
199 |
ataatgaaccatttaaggta |
218 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
12735479 |
acaatgaaccatttaaggta |
12735460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 12798406 - 12798287
Alignment:
| Q |
101 |
tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg |
198 |
Q |
| |
|
|||||| ||||||| ||||| ||||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||| || | |
|
|
| T |
12798406 |
tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag |
12798307 |
T |
|
| Q |
199 |
ataatgaaccatttaaggta |
218 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
12798306 |
acaatgaaccatttaaggta |
12798287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 313 - 388
Target Start/End: Complemental strand, 22015654 - 22015579
Alignment:
| Q |
313 |
accgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg |
388 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22015654 |
accgctaagattgtcgatatgatgaagcaagagaacctctatgcatcacaaggaggacctataattttatctcagg |
22015579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 22015881 - 22015825
Alignment:
| Q |
20 |
tatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaa |
76 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||| || ||||||| |
|
|
| T |
22015881 |
tatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaattacgggtaaa |
22015825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 22015744 - 22015667
Alignment:
| Q |
144 |
aacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagag |
221 |
Q |
| |
|
|||||||||||||| |||||| | || || ||| | || ||||||||||||||| ||||||||||||| |||| |||| |
|
|
| T |
22015744 |
aacagtggtttccccctttggttgcattttattgctggaattaagttccgaactaataatgaaccattcaaggcagag |
22015667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 53322735 - 53322862
Alignment:
| Q |
101 |
tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg |
198 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||||||||||| | ||||| |||||||| ||||||||||||| ||||||||||||| || | |
|
|
| T |
53322735 |
tatttttctggggtcttcatttctaattgagggctttaacttcttaagattggttaacctctttgtattcacttcattccagggattaagttccaaatcg |
53322834 |
T |
|
| Q |
199 |
ataatgaaccatttaaggtagaggtaacc |
227 |
Q |
| |
|
| |||||||||||||||||| |||||||| |
|
|
| T |
53322835 |
acaatgaaccatttaaggta-aggtaacc |
53322862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University