View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_17 (Length: 517)
Name: NF20954_high_17
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_17 |
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| [»] scaffold0330 (3 HSPs) |
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Alignment Details
Target: scaffold0330 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 6560 - 6191
Alignment:
| Q |
19 |
aatttatgatttatgccacaattttttattttagtacttaaatttatttcaaactttggttcaatcttatatatctggataaaattgataatgagaatct |
118 |
Q |
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| T |
6560 |
aatttatgatttatgccacaattttttattttagtacttaaatttatttcaaactttggttcaatcttatatatctggataaaattgatatagagaatct |
6461 |
T |
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| Q |
119 |
taaaaaatgaccatttaagaggatatttcataaacctctttactcatcaaaattgaggctcttttctcacttttatttaatttgtgttgttttttcttga |
218 |
Q |
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| T |
6460 |
tcaaaaatgaccttttaagaggatatttcataaacctctttactcatcaaaattgaggctcttttctcacttttatttaatttgtgttgttttttcttga |
6361 |
T |
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| Q |
219 |
caactactcactaatcttggattactatggattgttacaaattaccannnnnnnnnctttaaaaatttgagttgttttgttgtcggcaaaggtgttaaaa |
318 |
Q |
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| T |
6360 |
caactactctagtatcttggattactatggattgttacaaattacca-ttttttttctttaaaaatttgagttgttttgttgtcggcaaaggtgttgaaa |
6262 |
T |
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| Q |
319 |
acatatttggaatggattttaatgtggaattagtcttgtaattccaatatttgagggtatataagatatta |
389 |
Q |
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| T |
6261 |
acatatttggaatggattttaatgtggaattagtcttgtaattccaatatttgagggtatatatgatatta |
6191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 10451 - 10390
Alignment:
| Q |
19 |
aatttatgatttatgccacaattttttattttagtacttaaatttatttcaaactttggttca |
81 |
Q |
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| T |
10451 |
aatttatgatt-atgccacaatttttgtttttaggacttgaatttatttcaaagtttggttca |
10390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 10369 - 10332
Alignment:
| Q |
82 |
atcttatatatctggataaaattgataatgagaatctt |
119 |
Q |
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| T |
10369 |
atcttatatatctggataaaattgatatagagaatctt |
10332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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