View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_18 (Length: 503)
Name: NF20954_high_18
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 264 - 490
Target Start/End: Complemental strand, 32190751 - 32190523
Alignment:
| Q |
264 |
aaaacttatgcgattaagctattaatgtattgttttgaacaataatctaannnnnnn--aatgatcaagacgtcttatcgatcgacccatgcaattatac |
361 |
Q |
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| T |
32190751 |
aaaagttatgcgattaagctattaatgtattgttttgaacaataatctaatttttttttaatgatcaagacgtcttatcgatcgacccatgcaattatac |
32190652 |
T |
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| Q |
362 |
tatcctcatccttaataattactgctacattgaataataataatttttcaacttcaatattttttattnnnnnnngtcatggtagtgttgcattctctcc |
461 |
Q |
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| T |
32190651 |
tatcctcatccttaataattactgctacattgaataataataatttttcaacttcaatattttttattaaaaaaagtcatggtagtgttgcattctctcc |
32190552 |
T |
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| Q |
462 |
ctgtgagaagttcctagtgttctctccct |
490 |
Q |
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| T |
32190551 |
ctgtgagaagttcctagtgttctctccct |
32190523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 87 - 272
Target Start/End: Complemental strand, 32190981 - 32190794
Alignment:
| Q |
87 |
tgagattgagactgtatatcggtcatttataaaataaaatgactcaatcaattatcacgtaatcacattgtttgaaaatgttttgatataatacttataa |
186 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32190981 |
tgagattgagactgtatatcagtcatttataaaataaaatgactcaatcaattatcacgtaatcacattgtttgaaaatgttt-gatataatacttataa |
32190883 |
T |
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| Q |
187 |
gtttaatatgtttgatataaaacttatattttaacatgtttcatacaatctaagaaatattataatct---gtcaaatataaaacttat |
272 |
Q |
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| T |
32190882 |
gtttaatatgtttgatataaaacttatattttaacatgtttcatacaatctaagaaatattataatctgacgtcaaatataaaacttat |
32190794 |
T |
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