View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_high_19 (Length: 502)

Name: NF20954_high_19
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_high_19
NF20954_high_19
[»] chr8 (7 HSPs)
chr8 (17-435)||(15348435-15348853)
chr8 (307-418)||(12199897-12200008)
chr8 (307-418)||(12444325-12444436)
chr8 (291-382)||(4032277-4032368)
chr8 (303-393)||(12194916-12195006)
chr8 (303-393)||(12439344-12439434)
chr8 (442-491)||(15272044-15272096)
[»] chr4 (43 HSPs)
chr4 (53-420)||(48870130-48870497)
chr4 (53-420)||(48885816-48886183)
chr4 (258-421)||(7770991-7771154)
chr4 (258-417)||(48170914-48171076)
chr4 (267-421)||(48735649-48735806)
chr4 (267-392)||(48862857-48862985)
chr4 (292-421)||(45372419-45372548)
chr4 (265-393)||(7789704-7789832)
chr4 (258-383)||(7904657-7904782)
chr4 (258-389)||(33134151-33134285)
chr4 (265-392)||(45366553-45366683)
chr4 (275-393)||(48891024-48891143)
chr4 (289-391)||(48156786-48156888)
chr4 (68-407)||(48875447-48875786)
chr4 (267-393)||(7822584-7822710)
chr4 (258-384)||(7877344-7877470)
chr4 (270-418)||(48148022-48148173)
chr4 (258-393)||(7238048-7238183)
chr4 (258-386)||(7774157-7774285)
chr4 (263-383)||(49041471-49041591)
chr4 (267-393)||(7800252-7800378)
chr4 (265-406)||(50668645-50668786)
chr4 (258-392)||(33133653-33133790)
chr4 (259-393)||(7765236-7765370)
chr4 (271-393)||(7813095-7813217)
chr4 (259-393)||(7786058-7786192)
chr4 (291-393)||(7907940-7908042)
chr4 (258-383)||(37827322-37827447)
chr4 (273-392)||(45385131-45385249)
chr4 (267-349)||(48852316-48852401)
chr4 (52-154)||(50250909-50251011)
chr4 (323-391)||(48902567-48902635)
chr4 (290-377)||(49044589-49044676)
chr4 (44-141)||(48891279-48891376)
chr4 (297-388)||(48898342-48898436)
chr4 (117-204)||(45366402-45366489)
chr4 (79-214)||(45372215-45372350)
chr4 (291-405)||(50251169-50251283)
chr4 (52-141)||(48852530-48852619)
chr4 (270-390)||(47207552-47207672)
chr4 (68-151)||(37827129-37827212)
chr4 (327-377)||(49048996-49049046)
chr4 (68-144)||(48902802-48902878)
[»] chr5 (8 HSPs)
chr5 (267-390)||(29712806-29712929)
chr5 (277-392)||(29695768-29695883)
chr5 (258-390)||(29687669-29687801)
chr5 (327-390)||(42562728-42562791)
chr5 (68-145)||(29696075-29696152)
chr5 (292-393)||(1812040-1812141)
chr5 (66-144)||(29687975-29688053)
chr5 (328-377)||(178650-178699)
[»] chr1 (5 HSPs)
chr1 (267-389)||(24309796-24309918)
chr1 (267-392)||(24340030-24340155)
chr1 (267-384)||(24322086-24322203)
chr1 (278-393)||(24366770-24366885)
chr1 (267-389)||(24415456-24415577)
[»] scaffold0508 (1 HSPs)
scaffold0508 (271-392)||(11878-11999)
[»] chr3 (7 HSPs)
chr3 (267-393)||(11024874-11025000)
chr3 (267-393)||(11015862-11015988)
chr3 (267-393)||(47452247-47452370)
chr3 (300-393)||(11006332-11006425)
chr3 (41-154)||(47452015-47452128)
chr3 (324-360)||(955615-955651)
chr3 (82-154)||(11015668-11015740)
[»] chr6 (4 HSPs)
chr6 (275-369)||(21979989-21980083)
chr6 (285-393)||(21015391-21015499)
chr6 (47-142)||(21015672-21015767)
chr6 (324-384)||(14193139-14193199)
[»] chr7 (1 HSPs)
chr7 (286-417)||(48883373-48883505)


Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Complemental strand, 15348853 - 15348435
Alignment:
Q  17 agaaatattcagcgtctaatttcaaaccaataggggacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagtt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15348853 agaaatattcagcgtctaatttcaaaccaataggggacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggattgaataatagtt 15348754  T
Q  117 caaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatca 216  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15348753 caaaagtacaaagcctctacatgaacctttaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaataatca 15348654  T
Q  217 tcaagcgatgttgctaaatctatagaatgaggtagatgacctatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcga 316  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348653 tcaagcgatgctgctaaatctatagaatgaggtagatgacctatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcga 15348554  T
Q  317 agtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaactattaattc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15348553 agtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaacctctctagaatttgaactattaattc 15348454  T
Q  417 atgagataggtaaggtagt 435  Q
    |||||| ||||||||||||    
T  15348453 atgagacaggtaaggtagt 15348435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 307 - 418
Target Start/End: Complemental strand, 12200008 - 12199897
Alignment:
Q  307 gaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaa 406  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||| || |||||| |||||||| ||||||   || |||||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12199909  T
Q  407 ctattaattcat 418  Q
      ||||||||||    
T  12199908 tgattaattcat 12199897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 307 - 418
Target Start/End: Complemental strand, 12444436 - 12444325
Alignment:
Q  307 gaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaa 406  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||| || |||||| |||||||| ||||||   || |||||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12444337  T
Q  407 ctattaattcat 418  Q
      ||||||||||    
T  12444336 tgattaattcat 12444325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 382
Target Start/End: Original strand, 4032277 - 4032368
Alignment:
Q  291 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttca 382  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||||||  |||||||| |||||||| || ||||||||||||||||| ||||    
T  4032277 ggtaatttgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttca 4032368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 303 - 393
Target Start/End: Complemental strand, 12195006 - 12194916
Alignment:
Q  303 atgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 393  Q
    |||||||||||| ||||  ||||||||||||||||| ||||| |||||||||| ||||||||||| || |||||| |||||||| ||||||    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctc 12194916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 303 - 393
Target Start/End: Complemental strand, 12439434 - 12439344
Alignment:
Q  303 atgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 393  Q
    |||||||||||| ||||  ||||||||||||||||| ||||| |||||||||| ||||||||||| || |||||| |||||||| ||||||    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctc 12439344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 491
Target Start/End: Complemental strand, 15272096 - 15272044
Alignment:
Q  442 tttttcttctcagtgcgcttactccctctgcgac---ggtttcttttcttcat 491  Q
    ||||||||||| ||||||||||||||||||||||   ||||||||||||||||    
T  15272096 tttttcttctctgtgcgcttactccctctgcgactttggtttcttttcttcat 15272044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 53 - 420
Target Start/End: Complemental strand, 48870497 - 48870130
Alignment:
Q  53 acaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttc 152  Q
    ||||||||| || | |||||||||||||||||||||||||||| |||||| ||| |  | | | ||| | || |||||||||||||||||||| ||||||    
T  48870497 acaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatttc 48870398  T
Q  153 aaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgaggtaga 252  Q
    ||||||| ||| |  ||  ||| | |||||||||| ||||| ||||| |||  ||||||||| | ||||||||| | |||||||||||||| ||||  |     
T  48870397 aaaatcataataagattcaggaagcagaaaatcaagattgactgaagaagagatagaatcataagcaagcgatgcttctaaatctatagaacgaggaggt 48870298  T
Q  253 tgacctatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttac 352  Q
     |    ||| ||| ||| |||||||||||||||||||| || |  ||||||||||||||||| ||    ||||| ||||||||| |||||||||||||||    
T  48870297 ggtgagatgaacagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttac 48870198  T
Q  353 aaacgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaactattaattcatga 420  Q
    |||||||||||||||| |||||||| |||||||||| ||||   |||||||||||||| |||||||||    
T  48870197 aaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatga 48870130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 53 - 420
Target Start/End: Complemental strand, 48886183 - 48885816
Alignment:
Q  53 acaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttc 152  Q
    ||||||||| || | |||||||||||||||||||||||||||| |||||| ||| |  | | | ||| | || |||||||||||||||||||| ||||||    
T  48886183 acaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatttc 48886084  T
Q  153 aaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgaggtaga 252  Q
    ||||||| ||| |  ||  ||| | |||||||||| ||||| ||||| |||  ||||||||| | ||||||||| | |||||||||||||| ||||  |     
T  48886083 aaaatcataataagattcaggaagcagaaaatcaagattgactgaagaagagatagaatcataagcaagcgatgcttctaaatctatagaacgaggaggt 48885984  T
Q  253 tgacctatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttac 352  Q
     |    ||| ||| ||| |||||||||||||||||||| || |  ||||||||||||||||| ||    ||||| ||||||||| |||||||||||||||    
T  48885983 ggtgagatgaacagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttac 48885884  T
Q  353 aaacgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaactattaattcatga 420  Q
    |||||||||||||||| |||||||| |||||||||| ||||   |||||||||||||| |||||||||    
T  48885883 aaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatga 48885816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 258 - 421
Target Start/End: Complemental strand, 7771154 - 7770991
Alignment:
Q  258 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 357  Q
    |||||| |||| ||||| |||||||||||| | || || |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  7771154 tatgcataaaaatctacaagtgtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacg 7771055  T
Q  358 catttgaaacgtataagagatttcaccggtaacctctctagaatttgaactattaattcatgag 421  Q
    |||||||||| ||||||||| |||||||| ||||||   |||||||| | ||||| ||||||||    
T  7771054 catttgaaacatataagagacttcaccggcaacctcatcagaatttggattattagttcatgag 7770991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 258 - 417
Target Start/End: Original strand, 48170914 - 48171076
Alignment:
Q  258 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaa 354  Q
    |||| ||| |||| ||||||||||||||  |||||||||||||||||| |||||||| |||| |||||||   |||||||||| ||||||||||||||||    
T  48170914 tatgaacataattttacgagtgtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaa 48171013  T
Q  355 acgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaactattaattca 417  Q
    || ||||||||||||| |||||| ||||||| |||||||   |||||||||||||| ||||||    
T  48171014 acacatttgaaacgtagaagagacttcaccgataacctcagcagaatttgaactatcaattca 48171076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 267 - 421
Target Start/End: Original strand, 48735649 - 48735806
Alignment:
Q  267 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttg 363  Q
    ||||||||||||||| |||  ||||||||||| ||||||||||||||| || | || ||||   ||||||||||||||||||||||||||||| ||||||    
T  48735649 aattctacgagtgtgggttatggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatttg 48735748  T
Q  364 aaacgtataagagatttcaccggtaacctctctagaatttgaactattaattcatgag 421  Q
    ||||| |||||||| |||||||||||||||   |||||||||||||| || |||||||    
T  48735749 aaacgaataagagacttcaccggtaacctcagaagaatttgaactatcaactcatgag 48735806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 267 - 392
Target Start/End: Complemental strand, 48862985 - 48862857
Alignment:
Q  267 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttg 363  Q
    ||||||| | |||||||||||||| |||| |||||||||||||||||| |||| |||||||   ||||||||||||||||||||||| ||||||||||||    
T  48862985 aattctatgggtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttg 48862886  T
Q  364 aaacgtataagagatttcaccggtaacct 392  Q
    ||||| |||||||| ||||||||||||||    
T  48862885 aaacgaataagagacttcaccggtaacct 48862857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 292 - 421
Target Start/End: Original strand, 45372419 - 45372548
Alignment:
Q  292 gtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 391  Q
    ||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  392 tctctagaatttgaactattaattcatgag 421  Q
    |   |||||||||||  || ||||||||||    
T  45372519 ttagtagaatttgaatcatcaattcatgag 45372548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 265 - 393
Target Start/End: Complemental strand, 7789832 - 7789704
Alignment:
Q  265 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttga 364  Q
    |||| ||||| |||||||||||||| || || |||||||||||||||| | |||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  7789832 aaaaatctacaagtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttga 7789733  T
Q  365 aacgtataagagatttcaccggtaacctc 393  Q
    ||| ||||||||| |||||||| ||||||    
T  7789732 aacatataagagacttcaccggcaacctc 7789704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 258 - 383
Target Start/End: Complemental strand, 7904782 - 7904657
Alignment:
Q  258 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 357  Q
    |||||||| ||||||| ||||||  | ||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||     
T  7904782 tatgcacataattctaggagtgttagctgcggcggtgagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaaca 7904683  T
Q  358 catttgaaacgtataagagatttcac 383  Q
    |||||||||||||||||||| |||||    
T  7904682 catttgaaacgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 258 - 389
Target Start/End: Original strand, 33134151 - 33134285
Alignment:
Q  258 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaa 354  Q
    |||| ||| |||| ||| ||||||||||| |||||| |||||||||||||||||||| |||| |||||||   |||||||||||||| |||| |||||||    
T  33134151 tatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaa 33134250  T
Q  355 acgcatttgaaacgtataagagatttcaccggtaa 389  Q
    |||||||||||||| |||||||| |||||||||||    
T  33134251 acgcatttgaaacgaataagagacttcaccggtaa 33134285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 265 - 392
Target Start/End: Original strand, 45366553 - 45366683
Alignment:
Q  265 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaagacttacaaacgcatt 361  Q
    |||| ||||||||||||| ||||||||| || |||||||||||||||||| ||||  | |||   ||||||||||||||||||| ||||||||||||| |    
T  45366553 aaaactctacgagtgtgttttgcggcggaaagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcact 45366652  T
Q  362 tgaaacgtataagagatttcaccggtaacct 392  Q
    |||||||||||||||| ||||| ||||||||    
T  45366653 tgaaacgtataagagacttcactggtaacct 45366683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 275 - 393
Target Start/End: Complemental strand, 48891143 - 48891024
Alignment:
Q  275 gagtgtgtgttgcgg-cggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataa 373  Q
    |||||||||||| || |||||| ||||||||| |||||||| || | |||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  48891143 gagtgtgtgttgggggcggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataa 48891044  T
Q  374 gagatttcaccggtaacctc 393  Q
    |||| || |||| |||||||    
T  48891043 gagactttaccgataacctc 48891024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 289 - 391
Target Start/End: Original strand, 48156786 - 48156888
Alignment:
Q  289 gcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggta 388  Q
    ||||||||||||||||| |||||||| || | || ||| |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  48156786 gcggtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggta 48156885  T
Q  389 acc 391  Q
    |||    
T  48156886 acc 48156888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 68 - 407
Target Start/End: Complemental strand, 48875786 - 48875447
Alignment:
Q  68 tgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgatt 167  Q
    |||||||||||||||||||||||||||| |||||| ||||| || | | ||| |||| ||||||||| || ||||||| ||||||||||||| | | |      
T  48875786 tgtgaaatccggtggatggattccataggtagaggcttgaaaaacaatgcaacagtataaagcctctgcaagaacctttaatttcaaaatcatagttagg 48875687  T
Q  168 ttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgaggtagatg-acctatgcacaa 266  Q
    ||  ||| | |||||||||| |||||  | || |||| ||| ||||| | ||||||||| | | ||||||||||| ||||| || ||     ||| | |     
T  48875686 ttcaggaagaagaaaatcaagattgaccgcagaagaaatagtatcataaccaagcgatgcttccaaatctatagactgagg-aggtgttgagatgaatag 48875588  T
Q  267 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 366  Q
    |||||||||||   ||||||| ||||| | |||||||||||||||||  || |  || || ||||| ||||||||||||||||| |||||||||||||||    
T  48875587 aattctacgagacggtgttgccgcggtgagttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaa 48875488  T
Q  367 cgtataagagatttcaccggtaacctctctagaatttgaac 407  Q
    || || ||||| || || | |||||||   |||||||||||    
T  48875487 cgaattagagacttgactgataacctcagcagaatttgaac 48875447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 267 - 393
Target Start/End: Complemental strand, 7822710 - 7822584
Alignment:
Q  267 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 366  Q
    |||||||||||| |||||||| | ||| | |||||| ||||||||||| ||||  ||||||||||||||||||||||| || |||||||| || ||||||    
T  7822710 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaa 7822611  T
Q  367 cgtataagagatttcaccggtaacctc 393  Q
    ||||||||| | |||||||| ||||||    
T  7822610 cgtataagatacttcaccggcaacctc 7822584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 258 - 384
Target Start/End: Complemental strand, 7877470 - 7877344
Alignment:
Q  258 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 357  Q
    |||||||| ||||||| ||||||| |||| || ||| | |||||||||||||||||| || |  |||||||||||||||||||||||   |||||||| |    
T  7877470 tatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatg 7877371  T
Q  358 catttgaaacgtataagagatttcacc 384  Q
    |||||||||||||||||||| ||||||    
T  7877370 catttgaaacgtataagagacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 418
Target Start/End: Original strand, 48148022 - 48148173
Alignment:
Q  270 tctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttgaaa 366  Q
    |||| |||||||| |||  ||||| | || |||||||||||||||||||| |||||||   |||||||||||||||||||||||||| || |||||||||    
T  48148022 tctatgagtgtgttttgaagcggtgagttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaa 48148121  T
Q  367 cgtataagagatttcaccggtaacctctctagaatttgaactattaattcat 418  Q
    || |||||||| ||||| ||||||||    || ||||||||||| |||||||    
T  48148122 cgaataagagacttcactggtaaccttgaaaggatttgaactatcaattcat 48148173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 393
Target Start/End: Original strand, 7238048 - 7238183
Alignment:
Q  258 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 357  Q
    |||||| ||||  |||||||| || ||||| | ||||  ||| |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||     
T  7238048 tatgcataaaaacctacgagtatgcgttgcagaggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaaca 7238147  T
Q  358 catttgaaacgtataagagatttcaccggtaacctc 393  Q
    ||||||||||  |||||||| ||||| || ||||||    
T  7238148 catttgaaacagataagagacttcactggcaacctc 7238183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 386
Target Start/End: Original strand, 7774157 - 7774285
Alignment:
Q  258 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 357  Q
    |||||||| ||||||| ||||||| |||| || ||| | |||||||||||||||||| || |  |||||||||||||||||||||||   |||||||||     
T  7774157 tatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaaca 7774256  T
Q  358 catttgaaacgtataagagatttcaccgg 386  Q
    ||||||||| | |||||||| ||||||||    
T  7774257 catttgaaatgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 263 - 383
Target Start/End: Original strand, 49041471 - 49041591
Alignment:
Q  263 acaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcattt 362  Q
    |||||||||||||  |||| |||| || ||||| || |||||| |||||||| || |  ||||||||||||||||||||||||||||| |||||||||||    
T  49041471 acaaaattctacggttgtgggttgggggggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcattt 49041570  T
Q  363 gaaacgtataagagatttcac 383  Q
    |||||  |||||||| |||||    
T  49041571 gaaacaaataagagacttcac 49041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 393
Target Start/End: Complemental strand, 7800378 - 7800252
Alignment:
Q  267 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 366  Q
    |||||||||||| |||||||| | ||| | |||||| ||||||||||| |||   |||||||||| |||||||||||| || |||||||| || ||||||    
T  7800378 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaa 7800279  T
Q  367 cgtataagagatttcaccggtaacctc 393  Q
    ||||||||| | |||||||| ||||||    
T  7800278 cgtataagatacttcaccggcaacctc 7800252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 265 - 406
Target Start/End: Complemental strand, 50668786 - 50668645
Alignment:
Q  265 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttga 364  Q
    ||||||||||||||||||| | |||| |||| || |||||| ||||| || || |   |||| ||||| |||||||||||||| ||||||||||| ||||    
T  50668786 aaaattctacgagtgtgtgattcggcagtaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttga 50668687  T
Q  365 aacgtataagagatttcaccggtaacctctctagaatttgaa 406  Q
    ||||||||||| ||||||| || |||||| | | ||||||||    
T  50668686 aacgtataagatatttcacgggcaacctcaccaaaatttgaa 50668645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 258 - 392
Target Start/End: Complemental strand, 33133790 - 33133653
Alignment:
Q  258 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaa 354  Q
    |||| ||| |||| ||| ||||||||||| |||||| ||||||||||| |||||||| |||| | |||||   ||||||||||||||||||  |||||||    
T  33133790 tatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgcgaatttgcaaagtgaagatcattagagataagagaaaaccaaagcttacaa 33133691  T
Q  355 acgcatttgaaacgtataagagatttcaccggtaacct 392  Q
    | | |||||||||| |||||||| ||||  ||||||||    
T  33133690 atgaatttgaaacgaataagagacttcattggtaacct 33133653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 259 - 393
Target Start/End: Complemental strand, 7765370 - 7765236
Alignment:
Q  259 atgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgc 358  Q
    ||||| |||| ||||||||||||| ||||   | ||| ||| |||||||||||||| |||| |||||||||||||| |||||||||  ||||||||| ||    
T  7765370 atgcataaaaatctacgagtgtgttttgcatggttaagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgc 7765271  T
Q  359 atttgaaacgtataagagatttcaccggtaacctc 393  Q
    | ||||||  ||  ||||| |||||||||||||||    
T  7765270 acttgaaaactaagagagacttcaccggtaacctc 7765236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 271 - 393
Target Start/End: Complemental strand, 7813217 - 7813095
Alignment:
Q  271 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 370  Q
    |||||||| |||||||| | ||| | |||||| ||||| ||||| ||||  || |||||||||||||||||||| || |||||||| || ||||||||||    
T  7813217 ctacgagtatgtgttgcagtggtgaattgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgta 7813118  T
Q  371 taagagatttcaccggtaacctc 393  Q
    ||||| | |||||||| ||||||    
T  7813117 taagatacttcaccggcaacctc 7813095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 393
Target Start/End: Complemental strand, 7786192 - 7786058
Alignment:
Q  259 atgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgc 358  Q
    ||||| |||| ||||||||||||| |||    | ||| ||| |||||||||||||| || | |||||||||||||| ||||| |||   |||||||||||    
T  7786192 atgcataaaaatctacgagtgtgttttgtaaggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgc 7786093  T
Q  359 atttgaaacgtataagagatttcaccggtaacctc 393  Q
    |||||||   |||||||||||||||||| ||||||    
T  7786092 atttgaacaatataagagatttcaccggcaacctc 7786058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 291 - 393
Target Start/End: Complemental strand, 7908042 - 7907940
Alignment:
Q  291 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaac 390  Q
    ||||| |||||||||||||||||| || |  ||| ||||||||||||||||||| ||||||| |||  | ||||||||| ||||||| |||||||| |||    
T  7908042 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaac 7907943  T
Q  391 ctc 393  Q
    |||    
T  7907942 ctc 7907940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 258 - 383
Target Start/End: Original strand, 37827322 - 37827447
Alignment:
Q  258 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 357  Q
    |||| ||| ||||| |||||| |||| || ||| |||| |||||||||||||||||| ||||  |||| ||| |||||||  ||||| ||||||||||||    
T  37827322 tatgaacagaattcgacgagtttgtgctgtggccgtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacg 37827421  T
Q  358 catttgaaacgtataagagatttcac 383  Q
    ||| | |||| ||||||||| |||||    
T  37827422 catgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 273 - 392
Target Start/End: Original strand, 45385131 - 45385249
Alignment:
Q  273 acgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtata 372  Q
    ||||| |||||||| ||||| || |||||| ||||||| ||| ||||  | ||| ||||  |||||||||||||||||||||||| |||||||||||||     
T  45385131 acgagggtgtgttgtggcggaaagttgaaa-tgtgaatatgcaaagtgggtatcggagacgagagaaaaccaagacttacaaacggatttgaaacgtatg 45385229  T
Q  373 agagatttcaccggtaacct 392  Q
    ||||| || || ||||||||    
T  45385230 agagacttaactggtaacct 45385249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 48852401 - 48852316
Alignment:
Q  267 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaagga---tcagagataagagaaaaccaagact 349  Q
    |||||||||||||||||||| ||| ||||||| |||||| |||||||| |||| ||||   | |||||||||||||||||||||||    
T  48852401 aattctacgagtgtgtgttgaggcagtaatttcaaaatgcgaatttgcaaagtgaggattgtgagagataagagaaaaccaagact 48852316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 50250909 - 50251011
Alignment:
Q  52 gacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaattt 151  Q
    |||||||||| || | ||||||  |||||||||||||||||||| |||||| ||||| || |||  |||| || ||| |||||||||||||||| |||||    
T  50250909 gacaaaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaattt 50251008  T
Q  152 caa 154  Q
    |||    
T  50251009 caa 50251011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 48902635 - 48902567
Alignment:
Q  323 gatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 391  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| || ||||| || ||||| ||||    
T  48902635 gatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaacc 48902567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 377
Target Start/End: Original strand, 49044589 - 49044676
Alignment:
Q  290 cggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 377  Q
    ||||||||| ||||||||||||||| ||||  |  | ||||||||||||||||||  |||||||||| || |||||||||| ||||||    
T  49044589 cggtaatttcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagaga 49044676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 48891376 - 48891279
Alignment:
Q  44 caataggggacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaa 141  Q
    ||||||| |||||||||| || | |||||| ||| |||||||||||||||| ||||| |||||| | |   | |||||||||||| ||||||||||||    
T  48891376 caataggagacaaaggtatttgtttgtgaagtccagtggatggattccatacatagatgtttgagttagtatgcaaaagtacaaaccctctacatgaa 48891279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 388
Target Start/End: Complemental strand, 48898436 - 48898342
Alignment:
Q  297 ttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggta 388  Q
    |||||||||||||||||| ||||  | |||   ||||||||| || ||||||||||||||||| || ||||||||| ||||||| ||||| ||||    
T  48898436 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggta 48898342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 45366402 - 45366489
Alignment:
Q  117 caaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaa 204  Q
    |||||||| |||||||||||||||||||| ||||| || |||||||| |  ||  ||| | ||||||| || ||||||||||||||||    
T  45366402 caaaagtataaagcctctacatgaacctttaatttgaagatcagaataagattcgggaagcagaaaatgaagattgagtgaagcagaa 45366489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 45372215 - 45372350
Alignment:
Q  79 gtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttgtggatgta 178  Q
    |||||||||||||||||||||| | |||||| |   | ||||| || ||| |||||||||||||||| |||||||| |||| |||||  ||| ||||  |    
T  45372215 gtggatggattccatagatagaaggttgaattaccatgcaaaaatataaaccctctacatgaacctttaatttcaagatcaaaatgagattggggatcca 45372314  T
Q  179 gaaaatcaacattgagtgaagcagaagtagaatcat 214  Q
     ||||  ||  || ||||||||||||| ||||||||    
T  45372315 caaaactaaggtttagtgaagcagaagcagaatcat 45372350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 50251169 - 50251283
Alignment:
Q  291 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaac 390  Q
    ||||| |||||||||  |||||||  |||  |||||||||||||||||||||||||||||| |||| || || ||  |||||||||  ||||| || |||    
T  50251169 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacccactttaattgtataagagccttcactggcaac 50251268  T
Q  391 ctctctagaatttga 405  Q
    ||  ||| |||||||    
T  50251269 ctaactaaaatttga 50251283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 48852619 - 48852530
Alignment:
Q  52 gacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaa 141  Q
    |||||||||| || | |||||| |||||||||||||||||||||||| |  | |||| ||  || ||||| || ||||||||||||||||    
T  48852619 gacaaaggtatttgtttgtgaactccggtggatggattccatagataaatctctgaagaacggtgcaaaaatataaagcctctacatgaa 48852530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 390
Target Start/End: Complemental strand, 47207672 - 47207552
Alignment:
Q  270 tctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgt 369  Q
    |||| |||||||||||  || ||||| || |||||||||||| |  || |  || || ||||| |||||||| |||||||| ||||| |  || ||||||    
T  47207672 tctatgagtgtgtgttttggtggtaagttcaaaatgtgaattagaaaaatgtgggtcggagatgagagaaaatcaagacttccaaacactcttaaaacgt 47207573  T
Q  370 ataagagatttcaccggtaac 390  Q
    |||||||| ||||||||||||    
T  47207572 ataagagacttcaccggtaac 47207552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 37827129 - 37827212
Alignment:
Q  68 tgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaattt 151  Q
    |||||||||| ||||||||||||||||  |||| |||| || ||  || ||||| |||||| ||||||| |||||||| |||||    
T  37827129 tgtgaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaacctttaattt 37827212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 49048996 - 49049046
Alignment:
Q  327 agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 377  Q
    ||||||||||||||||||  |||||||||| || |||||||||| ||||||    
T  49048996 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagaga 49049046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 48902878 - 48902802
Alignment:
Q  68 tgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaacct 144  Q
    |||||||||| ||||| |||||||||| ||||| | |  || || ||| |||||||||||| ||||| |||||||||    
T  48902878 tgtgaaatccagtggaaggattccataaatagatggtgaaagaacagtgcaaaagtacaaaccctctgcatgaacct 48902802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 267 - 390
Target Start/End: Original strand, 29712806 - 29712929
Alignment:
Q  267 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 366  Q
    ||||||| ||| |||||||  |||||||| ||||||||||||||||||||| | ||  | ||||||||||||||||||  ||||||||||||| ||||||    
T  29712806 aattctaggagcgtgtgttttggcggtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 29712905  T
Q  367 cgtataagagatttcaccggtaac 390  Q
    || |||||||| ||||||||||||    
T  29712906 cgaataagagacttcaccggtaac 29712929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 277 - 392
Target Start/End: Complemental strand, 29695883 - 29695768
Alignment:
Q  277 gtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagag 376  Q
    |||||||| |||| ||||| |||||||||||||||||| |||| ||| | ||| |||||||| |||||  |||||||||||||||||||||| |||||||    
T  29695883 gtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagag 29695784  T
Q  377 atttcaccggtaacct 392  Q
    | || || ||||||||    
T  29695783 acttgactggtaacct 29695768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 390
Target Start/End: Complemental strand, 29687801 - 29687669
Alignment:
Q  258 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacg 357  Q
    |||| ||| ||||||| |||||||||    |||||||| ||||||||| |||||||| |||| ||| | ||| || |||||||||||||||||||||||     
T  29687801 tatgaacagaattctaggagtgtgtgcattggcggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaaca 29687702  T
Q  358 catttgaaacgtataagagatttcaccggtaac 390  Q
    || ||||| ||||||||||| ||||| ||||||    
T  29687701 cacttgaagcgtataagagacttcactggtaac 29687669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 327 - 390
Target Start/End: Original strand, 42562728 - 42562791
Alignment:
Q  327 agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaac 390  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaac 42562791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 29696152 - 29696075
Alignment:
Q  68 tgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaacctt 145  Q
    ||||||||||||||||||||||||||| | ||||| |||| ||| |||||||||||| |||||||||||| |||||||    
T  29696152 tgtgaaatccggtggatggattccatatacagaggcttgagtaacagttcaaaagtataaagcctctacacgaacctt 29696075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 393
Target Start/End: Complemental strand, 1812141 - 1812040
Alignment:
Q  292 gtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 391  Q
    |||| |||||||||  ||||||| ||||  ||||  |||||||||||||||||  |||||||||| |||||| ||||||| ||| | ||||| |||||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacc 1812042  T
Q  392 tc 393  Q
    ||    
T  1812041 tc 1812040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 29688053 - 29687975
Alignment:
Q  66 tctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaacct 144  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||||  |    |||||| ||| |||||||||||||||    
T  29688053 tctgtgaactccggtggatggattccatagataaaggcttgaataaccggagcaaagtataaaacctctacatgaacct 29687975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 178699 - 178650
Alignment:
Q  328 gagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 377  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagaga 178650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 267 - 389
Target Start/End: Complemental strand, 24309918 - 24309796
Alignment:
Q  267 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 366  Q
    ||||||||| ||||||||||  |  |||| |||||||||||||||||| |||| || |||||||||||||||||||||  ||||||||||| ||||||||    
T  24309918 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaa 24309819  T
Q  367 cgtataagagatttcaccggtaa 389  Q
    || |||||||| || ||||||||    
T  24309818 cgaataagagacttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 267 - 392
Target Start/End: Complemental strand, 24340155 - 24340030
Alignment:
Q  267 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 366  Q
    ||||||| ||||||||||||| || |||| |||||| ||||||||||| |||| |  |||||||||||| |||||||| |||||||||||  ||||||||    
T  24340155 aattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaa 24340056  T
Q  367 cgtataagagatttcaccggtaacct 392  Q
    || |||||||| || |||||||||||    
T  24340055 cgaataagagacttaaccggtaacct 24340030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 267 - 384
Target Start/End: Complemental strand, 24322203 - 24322086
Alignment:
Q  267 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 366  Q
    ||||| ||||||||||||||| || ||| |  |||| ||||||||||| ||   |||||  |||||||||||||||||||||||||||||||||||||||    
T  24322203 aattcgacgagtgtgtgttgcagcagtattcagaaactgtgaatttgcaaaacgaggatttgagataagagaaaaccaagacttacaaacgcatttgaaa 24322104  T
Q  367 cgtataagagatttcacc 384  Q
    || |||||||| ||||||    
T  24322103 cgaataagagacttcacc 24322086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 393
Target Start/End: Complemental strand, 24366885 - 24366770
Alignment:
Q  278 tgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 377  Q
    |||||||||| || ||||| ||||| ||||||||||| ||||||||||  ||||||||||||||||| ||||| ||||| ||||||||||| || ||||     
T  24366885 tgtgtgttgcagcagtaatctgaaactgtgaatttgcaaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagagt 24366786  T
Q  378 tttcaccggtaacctc 393  Q
    ||  || |||||||||    
T  24366785 ttcaactggtaacctc 24366770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 267 - 389
Target Start/End: Complemental strand, 24415577 - 24415456
Alignment:
Q  267 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 366  Q
    ||||| ||||||||||||||| || ||||| ||||| ||||||||||| ||    ||||  || |||||||||||||||||||||| |||||||||||||    
T  24415577 aattcgacgagtgtgtgttgcagcagtaatctgaaactgtgaatttgcaaaact-ggatttgaaataagagaaaaccaagacttacgaacgcatttgaaa 24415479  T
Q  367 cgtataagagatttcaccggtaa 389  Q
    || |||||||| || ||||||||    
T  24415478 cgaataagagacttaaccggtaa 24415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 392
Target Start/End: Complemental strand, 11999 - 11878
Alignment:
Q  271 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 370  Q
    ||||||||||||||||  |  |||| |||||||||||||||||| |||| |  ||||||||||||||||||||| |||||||||||| |||||||||| |    
T  11999 ctacgagtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacgga 11900  T
Q  371 taagagatttcaccggtaacct 392  Q
    ||||||| || | |||||||||    
T  11899 taagagacttaatcggtaacct 11878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 267 - 393
Target Start/End: Original strand, 11024874 - 11025000
Alignment:
Q  267 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 366  Q
    |||||||  |||||||||||| | || || || |||||| || ||||| |||| | |||||||||||||||  ||||| |||||||||||||||||||||    
T  11024874 aattctattagtgtgtgttgcaggggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaa 11024973  T
Q  367 cgtataagagatttcaccggtaacctc 393  Q
    ||||| ||||| |||||||||||||||    
T  11024974 cgtatgagagacttcaccggtaacctc 11025000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 393
Target Start/End: Original strand, 11015862 - 11015988
Alignment:
Q  267 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 366  Q
    |||||||  |||||||||||| | || || || |||||| || ||||| |||| | |||||||||||||||  ||| | |||||||||||||||||||||    
T  11015862 aattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaa 11015961  T
Q  367 cgtataagagatttcaccggtaacctc 393  Q
    ||||| ||||| |||||||||||||||    
T  11015962 cgtatgagagacttcaccggtaacctc 11015988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 393
Target Start/End: Original strand, 47452247 - 47452370
Alignment:
Q  267 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 366  Q
    |||||||||||||||||   ||||||||| || ||||||||  ||||| |||  |||||||||||||||||||||||| |||||| ||| ||| |||||     
T  47452247 aattctacgagtgtgtg---cggcggtaagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaag 47452343  T
Q  367 cgtataagagatttcaccggtaacctc 393  Q
    |||| |||||| |||||||| ||||||    
T  47452344 cgtacaagagacttcaccggcaacctc 47452370  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 300 - 393
Target Start/End: Original strand, 11006332 - 11006425
Alignment:
Q  300 aaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 393  Q
    |||||| || ||||| |||| |||||||||||||||||  ||||| ||||||||||| || |||||||||||||| || |||||||| ||||||    
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctc 11006425  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 47452015 - 47452128
Alignment:
Q  41 aaccaataggggacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatga 140  Q
    |||||| ||| | |||||||| || | |||||| ||| ||||||||||||||||  |||| ||||||| || |  | ||||||| ||| |||||||||||    
T  47452015 aaccaaaaggaggcaaaggtatttgtttgtgaactccagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatga 47452114  T
Q  141 accttcaatttcaa 154  Q
    ||||| ||||||||    
T  47452115 acctttaatttcaa 47452128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 955651 - 955615
Alignment:
Q  324 atcagagataagagaaaaccaagacttacaaacgcat 360  Q
    ||||||||||||||||  |||||||||||||||||||    
T  955651 atcagagataagagaattccaagacttacaaacgcat 955615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 11015668 - 11015740
Alignment:
Q  82 gatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaa 154  Q
    |||||||||||||| |||| ||||||| || |  |||||| || ||| ||||||||||||| || ||||||||    
T  11015668 gatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaacttttaatttcaa 11015740  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 369
Target Start/End: Original strand, 21979989 - 21980083
Alignment:
Q  275 gagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgt 369  Q
    |||||||||||||||||| ||  | |||||||||||| || ||||  |||| |||||| ||||||||||||||||||||||| || |||||||||    
T  21979989 gagtgtgtgttgcggcggcaagatcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgt 21980083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 393
Target Start/End: Complemental strand, 21015499 - 21015391
Alignment:
Q  285 tgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcacc 384  Q
    |||||| ||||||| |||||||||| |||| ||||  |  | |||||||||||||||| |  |||||||||| || |||||||||| ||||||  | |||    
T  21015499 tgcggcagtaatttcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgacc 21015400  T
Q  385 ggtaacctc 393  Q
    |||||||||    
T  21015399 ggtaacctc 21015391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 21015767 - 21015672
Alignment:
Q  47 taggggacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaac 142  Q
    |||| |||||||||| || | |||||| ||  ||||||||||||||||| |||| |||||||| || || ||||| || ||| |||||||||||||    
T  21015767 taggagacaaaggtatttgtttgtgaactctagtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaac 21015672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 384
Target Start/End: Original strand, 14193139 - 14193199
Alignment:
Q  324 atcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcacc 384  Q
    |||| |||||||||||| |||| |||||||||| |||||||||| ||  ||||| ||||||    
T  14193139 atcaaagataagagaaagccaaaacttacaaacacatttgaaacctaagagagacttcacc 14193199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 417
Target Start/End: Complemental strand, 48883505 - 48883373
Alignment:
Q  286 gcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgca---tttgaaacgtataagagatttca 382  Q
    ||||| |||| ||||||||| || ||||||||||  | || |||||  ||||||||||||| ||||||||| ||   ||||||||||| |||||| ||||    
T  48883505 gcggctgtaagttgaaaatgggattttgcgaagttggtatgagaga--agagaaaaccaaggcttacaaacacattttttgaaacgtaaaagagacttca 48883408  T
Q  383 ccggtaacctctctagaatttgaactattaattca 417  Q
    |  |||||||| | | ||||||||  |||||||||    
T  48883407 catgtaacctcaccaaaatttgaatgattaattca 48883373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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