View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_20 (Length: 490)
Name: NF20954_high_20
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Original strand, 103184 - 103648
Alignment:
| Q |
19 |
gtagaaccccatgggacaaatcttttgcgagcagagagcctacgagcaagatcttgattattgttattgttgtaagcatcagacggtggtttaaacggtt |
118 |
Q |
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| T |
103184 |
gtagaaccccatgggacaaatcttttgcgagcagagagcctacgagcaagatcttgattattgttattgttgtaagcatcggacggtggtttaaacggtt |
103283 |
T |
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| Q |
119 |
ttctgcaaatagcggcagctccattggtggaatatactctcggcagcaacgactgtctcttcacaataaggttacctttgattagggcttctacattctg |
218 |
Q |
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| T |
103284 |
ttctgcaaatagcggcagctccattggtggaatatactctcggcagcaacgactgtctcttcacaataaggttacctttgattagggcttctacattctg |
103383 |
T |
|
| Q |
219 |
agatttccgttgtgaaacttgttcaatttcggaatc------------agaagaagaagacgatgacacttcaacttcttcatcggaatcagaagaagaa |
306 |
Q |
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| T |
103384 |
agatttccgttgtgaaacttgttcaatttcggaatcagaagaagaagaagaagaagaagacgatgacacttcaacttcttcatcggaatcagaagaaaaa |
103483 |
T |
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| Q |
307 |
gacgacgatgacaacaacactgcgtcttcgtcttcctccaacattctctcttccccgcaccgccacttttcaatttaattttcctttaccgccaaaccaa |
406 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103484 |
gacgacgatgacaacaaaactacgtcttcgtcttcctccaacattctctcttccccgcaccgccacttttcaatttaattttcctttaccgccaaaccaa |
103583 |
T |
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| Q |
407 |
tcaatgtactccttctctccctc-aaaatcaatcgaacttttcataccatttaatataggcttaa |
470 |
Q |
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| T |
103584 |
tcaatgtactccttctctccctcaaaaatcaatcgaacttttcataccatttaatacaggattaa |
103648 |
T |
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