View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_29 (Length: 472)
Name: NF20954_high_29
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 159 - 456
Target Start/End: Complemental strand, 37984133 - 37983840
Alignment:
| Q |
159 |
cactatgctatgctgtgagaatataatatcatcatcatcat---aatattactgtctcgtgatgtatgatatgatttgatttgattgatttcacattcta |
255 |
Q |
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| T |
37984133 |
cactatgctatgctgtgagaatataatatcatcatcatcgtcgtaatattactgtctcgtgatgtatgatatgatttgatttgattgatttcacattcta |
37984034 |
T |
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| Q |
256 |
cactcacttactactaacttcaatcacacactaattcatttctctaaaataatcacacactgttaaatgtcttnnnnnnntgtttcattaatctagtcgg |
355 |
Q |
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| T |
37984033 |
cactcacttgctactaacttcaatcacacactaattcatttctctaaaataatcacacactgttaaatgtcttaaaaaaatgtttcattaatctagtcgg |
37983934 |
T |
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| Q |
356 |
ttatattagttatattgtggacatttttacttaaatttataatagattctaataaaatcgtatatttaaaaaattggaatgagatgttaatattagaata |
455 |
Q |
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| T |
37983933 |
ttatattagttatattgtggacatttttac-------tataatagattctaataaaatcgtatatttaaaaaattggaatgagatgttaatattagaata |
37983841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 37984303 - 37984165
Alignment:
| Q |
1 |
attcttcgagaacgtgttcgacttccattctagggttttgtgctggacaaggtctcttcgccattgat---nnnnnnnnnnnnnnnnntggaattggaat |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37984303 |
attcttcgagaacgtgttcgacttccattctagggttttgtgctggacaaggtctcttcgccattgatgaagaagaagaagaagaagatggaattggaat |
37984204 |
T |
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| Q |
98 |
ctcaggttctgaaaccgtatccataccccgaatcaatac |
136 |
Q |
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| T |
37984203 |
ctcaggttctgaaaccgtatccataccccgaatcaatac |
37984165 |
T |
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