View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_30 (Length: 439)
Name: NF20954_high_30
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 29723074 - 29722648
Alignment:
| Q |
20 |
ctttgatcacttttcacaggaaaagtttgtttaagcatctccaatggcaccatgtgcaactttgttgaagaaaggtagcagaacaaagcttctctgatca |
119 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29723074 |
ctttgatcacttttcataggaaaagtttgtttaagcatctccaatggcaccatgtgcaactttgttgaagaaaggtagcagaacaaagcttctctgatca |
29722975 |
T |
|
| Q |
120 |
catagaaataaaagatttcaaagttctctgttatgtatcaataatttaaataatcaatttgtgaagcatatatgctgtgaggttaatattgttattctga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29722974 |
catagaaataaaagatttcaaagttctctgttatgtatcaataatttaaaatatcaatttgtgaagcatatatgctgtgaggttaatattgttattctga |
29722875 |
T |
|
| Q |
220 |
agaagaagaaaaacatgtcatgtaatctaattattggaatactctaatggtgccactcccag----------------tagtatagttgtatgaatgtta |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
29722874 |
agaagaagaaaaacatgtcatgtaatctaattattggaatactctaatggtgccactcctagtcctccttcacttttctagtatagttgtatgaatgtta |
29722775 |
T |
|
| Q |
304 |
tttgagagaaaatgtgattgttgtgaatcaccattttaactttgtgtttcttgacctcctgatatctaaaatgctcagctacttcataaatttgagtttt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29722774 |
tttgagagaaaatgtgattgttgtgaatcaccattttaactttgtgtttcttgacctcctgatatctaaaatgctcagctacttcataaatttgagtttt |
29722675 |
T |
|
| Q |
404 |
tcagctacttcacttttctagtataat |
430 |
Q |
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| T |
29722674 |
tcagctacttcacttttctagtataat |
29722648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 3022033 - 3021971
Alignment:
| Q |
34 |
cacaggaaaagtttgtttaagcatctccaatggcaccatgtgcaactttgttgaagaaaggta |
96 |
Q |
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| T |
3022033 |
cacaggaaaagtttgtctaagcatctccagtagaactatttgcaactttgttgaagaagggta |
3021971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 3021919 - 3021886
Alignment:
| Q |
151 |
tatgtatcaataatttaaataatcaatttgtgaa |
184 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
3021919 |
tatgtatcaataatttaaataatgaatttgtgaa |
3021886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 37165764 - 37165954
Alignment:
| Q |
20 |
ctttgatcacttttcacaggaaaagtttgtttaagcatctccaatggcaccatgtgcaactttgttgaagaaaggtagcagaacaaagcttctctgatca |
119 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |
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| T |
37165764 |
ctttgatcactttccacaggaaaagtttgtttaagcatctccaatagcaccatgtgcaactttgttgaagaagggtagcagaacgaagcttctctcatca |
37165863 |
T |
|
| Q |
120 |
catagaaataaaagatttca--aagttctctgttatgtatcaataatttaaataatcaatttgtgaagcatatatgctgtgaggttaatatt |
209 |
Q |
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|| |||||||||||| | | ||| | ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
37165864 |
cagagaaataaaagagctgatcaagat-tctgttacgtatcaataatttaaataatcaatttttgaagcatatatgctgtgaaattaatatt |
37165954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 35142004 - 35141951
Alignment:
| Q |
137 |
tcaaagttctctgttatgtatcaataatttaaataatcaatttgtgaagcatat |
190 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| |
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| T |
35142004 |
tcaaagttctctgatatgtatcaataatttaaataatcagtttgtgaagtatat |
35141951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 37166119 - 37166204
Alignment:
| Q |
313 |
aaatgtgattgttgtgaatcaccattttaactttgtgtttcttgacctcctgatatctaaaatgctcagctacttcataaatttgagtttt |
403 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| ||||||||| | || ||||||||||| |||||||||||||||| |||||| |
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| T |
37166119 |
aaatatgattgttgtgaatcaccattttaactttgtatttcttgacat----gta-ctaaaatgctctgctacttcataaatttaagtttt |
37166204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 35142096 - 35142002
Alignment:
| Q |
28 |
acttttcacaggaaaagtttgtttaagcatctccaatggcaccatgtgcaacttt-gttgaagaaaggtagcagaacaa--agcttctctgatca |
119 |
Q |
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||||| |||||||||||||||| ||| |||||||||| | ||||| || |||||| |||||||||||||||||||||| |||| ||||||||| |
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| T |
35142096 |
actttccacaggaaaagtttgtctaaacatctccaattgaaccatttgtaactttatttgaagaaaggtagcagaacaagtagctgctctgatca |
35142002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 37133360 - 37133447
Alignment:
| Q |
111 |
ctctgatcacatagaaataaaagatttcaaagttctctgttatgtatcaataatttaaataatcaatttgtgaagcatatatgctgtg |
198 |
Q |
| |
|
||||||||| | || || ||| || |||||||||||| ||||||| ||||||||||||||||| || |||||||| |||||| |||| |
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| T |
37133360 |
ctctgatcagagagtaacaaaggagttcaaagttctcaattatgtaacaataatttaaataatcgatatgtgaagcttatatgttgtg |
37133447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 38750493 - 38750530
Alignment:
| Q |
151 |
tatgtatcaataatttaaataatcaatttgtgaagcat |
188 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
38750493 |
tatgcatcaataatttaaataatcaatttgtgaagcat |
38750530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 37140456 - 37140488
Alignment:
| Q |
28 |
acttttcacaggaaaagtttgtttaagcatctc |
60 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
37140456 |
actttccacaggaaaagtttgtttaagcatctc |
37140488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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