View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_high_36 (Length: 408)

Name: NF20954_high_36
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_high_36
NF20954_high_36
[»] chr2 (4 HSPs)
chr2 (1-408)||(19477111-19477520)
chr2 (270-308)||(12457017-12457055)
chr2 (271-308)||(9154173-9154210)
chr2 (270-308)||(12890264-12890302)
[»] chr5 (2 HSPs)
chr5 (1-104)||(39003122-39003225)
chr5 (271-308)||(30264588-30264625)
[»] chr3 (1 HSPs)
chr3 (30-137)||(54425647-54425754)
[»] chr1 (5 HSPs)
chr1 (31-137)||(44911977-44912082)
chr1 (271-308)||(31922879-31922916)
chr1 (270-308)||(6380150-6380188)
chr1 (278-308)||(46836415-46836445)
chr1 (271-308)||(28838594-28838631)
[»] chr7 (5 HSPs)
chr7 (270-308)||(31448402-31448440)
chr7 (271-308)||(10248841-10248878)
chr7 (270-308)||(1287155-1287193)
chr7 (270-308)||(11575479-11575517)
chr7 (270-314)||(9077524-9077568)
[»] chr6 (3 HSPs)
chr6 (33-109)||(32752880-32752956)
chr6 (270-308)||(1520938-1520976)
chr6 (271-308)||(32006908-32006945)
[»] chr8 (4 HSPs)
chr8 (270-308)||(15196538-15196576)
chr8 (270-308)||(24802593-24802631)
chr8 (30-128)||(31219562-31219659)
chr8 (270-308)||(38125622-38125660)
[»] chr4 (1 HSPs)
chr4 (269-308)||(32564867-32564906)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 19477520 - 19477111
Alignment:
Q  1 caggaccttccgatctaaatcatgcaattgagattgtttagaataatttgacaactgagttaatttaaatcgtactatctataattaacaactaagatgc 100  Q
    ||||||| ||||||||||||| ||  || || ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||  | ||||||    
T  19477520 caggaccgtccgatctaaatcttgtgatcgaaattgtttagaataatttgacaactgagttaatttaaatcatacgatctataattaacagttgagatgc 19477421  T
Q  101 aaaacaacgacaaaacaacgtgctttttgacagcagg-aaactcagtcctccaatttcattaccaaagttccattcaatgtgtagtgtacttcaatgtgt 199  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  19477420 aaaacaacggcaaaacaacgtgctttttgacggcagggaaactcagtcctccaatttcattcccaaagtaccattcaatgtgtagtgtacttcaatgtgt 19477321  T
Q  200 gtcccactttcatcacattaatttttcaaataatagtctagttgatatcacatacattgaatgcgataagatactctctccgtccctatatctaagcacc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  19477320 gtcccactttcatcacattaatttttcaaataatagtctagttgagatcacatacattgaatgcgataagatactccatccgtccctatatctaagcacc 19477221  T
Q  300 cttttattatagggagtactacataagaacttctcatatgtgctcaatatat-aaccataaacattttccttttgcattcttaatcaaagaactacttta 398  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19477220 cttttattagagggagtactacataagaacttctcatatgtgctcaatatatcaaccataaacattttccttttgcattcttaatcaaagaactacttta 19477121  T
Q  399 gggatctcaa 408  Q
    ||||||||||    
T  19477120 gggatctcaa 19477111  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 12457017 - 12457055
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttatta 308  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  12457017 atactccctccgtccctatatctaagcacccttttatta 12457055  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 9154210 - 9154173
Alignment:
Q  271 tactctctccgtccctatatctaagcacccttttatta 308  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  9154210 tactccctccgtccctatatctaagcacccttttatta 9154173  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 12890264 - 12890302
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttatta 308  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  12890264 atactccctccgtccctatatctaagcatccttttatta 12890302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 39003122 - 39003225
Alignment:
Q  1 caggaccttccgatctaaatcatgcaattgagattgtttagaataatttgacaactgagttaatttaaatcgtactatctataattaacaactaagatgc 100  Q
    ||||||| || |||||||||| ||   ||||||||||||||||| |||||| ||||||||||||||||||  ||  ||||||||||||| ||| |||||     
T  39003122 caggaccgtctgatctaaatcgtgtggttgagattgtttagaatgatttgataactgagttaatttaaattatatgatctataattaacgactgagatga 39003221  T
Q  101 aaaa 104  Q
    ||||    
T  39003222 aaaa 39003225  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 30264625 - 30264588
Alignment:
Q  271 tactctctccgtccctatatctaagcacccttttatta 308  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  30264625 tactccctccgtccctatatctaagcactcttttatta 30264588  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 54425754 - 54425647
Alignment:
Q  30 gagattgtttagaataatttgacaactgagttaatttaaatcgtactatctataattaacaactaagatgcaaaacaacgacaaaacaacgtgctttttg 129  Q
    ||||||||||| ||||||||||||||||||||||||||||  |||  ||||| |||||||   | ||||||||||| |||  |||||| ||||||||||     
T  54425754 gagattgtttaaaataatttgacaactgagttaatttaaactgtaagatctacaattaacggttgagatgcaaaactacggtaaaacatcgtgctttttt 54425655  T
Q  130 acagcagg 137  Q
    ||| ||||    
T  54425654 acaacagg 54425647  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 44912082 - 44911977
Alignment:
Q  31 agattgtttagaataatttgacaactgagttaatttaaatcgtactatctataattaacaactaagatgcaaaacaacgacaaaacaacgtgctttttga 130  Q
    ||||||||||||||||||| | ||||||||||||||||| |    ||||||||||||| |  | ||||||||||||| | ||||||||||||| ||||||    
T  44912082 agattgtttagaataatttta-aactgagttaatttaaaccactatatctataattaatagttgagatgcaaaacaatgccaaaacaacgtgcattttga 44911984  T
Q  131 cagcagg 137  Q
    | |||||    
T  44911983 ccgcagg 44911977  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 31922916 - 31922879
Alignment:
Q  271 tactctctccgtccctatatctaagcacccttttatta 308  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31922916 tactctctccgtccctatatctaagcacccttttatta 31922879  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 6380150 - 6380188
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttatta 308  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  6380150 atactccctccatccctatatctaagcacccttttatta 6380188  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 308
Target Start/End: Complemental strand, 46836445 - 46836415
Alignment:
Q  278 tccgtccctatatctaagcacccttttatta 308  Q
    |||||||||||||||||||||||||||||||    
T  46836445 tccgtccctatatctaagcacccttttatta 46836415  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 28838631 - 28838594
Alignment:
Q  271 tactctctccgtccctatatctaagcacccttttatta 308  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  28838631 tactctctccgtcactatatctaagaacccttttatta 28838594  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 31448440 - 31448402
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttatta 308  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31448440 atactctctccgtccctatatctaagcacccttttatta 31448402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 10248878 - 10248841
Alignment:
Q  271 tactctctccgtccctatatctaagcacccttttatta 308  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  10248878 tactctctccgtctctatatctaagcacccttttatta 10248841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 1287193 - 1287155
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttatta 308  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  1287193 atactctcttcgtccctatatctaagcactcttttatta 1287155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 11575517 - 11575479
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttatta 308  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  11575517 atactctctccgtccctatatctaagcatcattttatta 11575479  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 9077524 - 9077568
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttattataggga 314  Q
    ||||||||||||||| ||||| ||||||| ||||||||| |||||    
T  9077524 atactctctccgtccttatatttaagcactcttttattagaggga 9077568  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 32752880 - 32752956
Alignment:
Q  33 attgtttagaataatttgacaactgagttaatttaaatcgtactatctataattaacaactaagatgcaaaacaacg 109  Q
    ||||||||||||||||| | || |||||||||||||| ||| | |||||||||||| |  ||||||| |||||||||    
T  32752880 attgtttagaataattttataattgagttaatttaaaccgttcaatctataattaatagttaagatgtaaaacaacg 32752956  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 1520976 - 1520938
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttatta 308  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  1520976 atactctctccatccttatatctaagcacccttttatta 1520938  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 32006908 - 32006945
Alignment:
Q  271 tactctctccgtccctatatctaagcacccttttatta 308  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  32006908 tactctatccgtccctatatctaagtacccttttatta 32006945  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 15196576 - 15196538
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttatta 308  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  15196576 atactccctccgtccctatatctaagcacccttttatta 15196538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 24802631 - 24802593
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttatta 308  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  24802631 atactctatccgtccctatatctaagcacccttttatta 24802593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 31219562 - 31219659
Alignment:
Q  30 gagattgtttagaataatttgacaactgagttaatttaaatcgtactatctataattaacaactaagatgcaaaacaacgacaaaacaacgtgcttttt 128  Q
    ||||||||||||||| |||| | |||||||||||||||||  ||   ||||| |||||||  || ||||||||| || |||||||||| | ||||||||    
T  31219562 gagattgtttagaatgattttataactgagttaatttaaactgtttgatcta-aattaacggctgagatgcaaatcagcgacaaaacatcatgcttttt 31219659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 38125660 - 38125622
Alignment:
Q  270 atactctctccgtccctatatctaagcacccttttatta 308  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  38125660 atactccctccgtccctatatgtaagcacccttttatta 38125622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 32564906 - 32564867
Alignment:
Q  269 gatactctctccgtccctatatctaagcacccttttatta 308  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  32564906 gatactccctccgtccctatatgtaagcacccttttatta 32564867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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