View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_37 (Length: 400)
Name: NF20954_high_37
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 120 - 392
Target Start/End: Original strand, 47436206 - 47436478
Alignment:
| Q |
120 |
atgaatgaagctgtaatatttatgttatcattatccaagtaaaacaaaacaattgtacaacatactcataaacaaatgaaaataaaatttaccaatgaat |
219 |
Q |
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| T |
47436206 |
atgaatgaagctgtaatatttatgttatcattatccaagtaaaacaaaacaattgtacaacatactcataaacaaatgaaaataaaatttaccaatgaat |
47436305 |
T |
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| Q |
220 |
cacttgtctttcacttcaacaccagttttaccagcaatgatgacagaggtagccatgttcaagaacaaaccatgctcgacgacaccttcgagggacgaaa |
319 |
Q |
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| T |
47436306 |
cacttgtctttcacttcaacaccagttttaccagcaatgatgacagaggtagccatgttcaagaacaaaccatgctcgacgacaccttcgagggacgaaa |
47436405 |
T |
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| Q |
320 |
tctcagctccagcagcatttgcatctctaatgggagtcttaaaatacaaatcaacaatgtaattagaattatc |
392 |
Q |
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| T |
47436406 |
tctcagctccagcagcatttgcatctctaatgggagtcttaaaatacaaatcaacaatgtaattagaattatc |
47436478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 47436051 - 47436176
Alignment:
| Q |
15 |
gaaccaaacaaccgtaa-gtttgcaacaaccacactcttaaaagttaaaacacttcca------------------catcataaacaatatgtatgaata |
95 |
Q |
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| T |
47436051 |
gaaccaaacaaccgtaaagtttgcaacaaccacactcttaaaagttaaaacacttccacatcctagccattgcttgcatcataaacaatatgtatgaata |
47436150 |
T |
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| Q |
96 |
tgagattgtctttcttttattttcat |
121 |
Q |
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| T |
47436151 |
tgagattgtctttcttttattttcat |
47436176 |
T |
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