View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_48 (Length: 344)
Name: NF20954_high_48
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 331
Target Start/End: Original strand, 43212172 - 43212488
Alignment:
| Q |
15 |
atgatttgcatatattccatgccatgttgtttttgacataacctttctgttgatgcagaggctgttcagcgtgctattgctattgcagagactgagggtg |
114 |
Q |
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| T |
43212172 |
atgatttgcatatattccatgccatattgtttttgacataacctttctgttgatgcagaggctgttcagcgtgctattgctattgcagagactgagggtg |
43212271 |
T |
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| Q |
115 |
atggtcaaatagaagccactcatttggagagtattcttcctcagttgcttctagatttctaaagcatttgatgatttgaaatacccatctgtaactatta |
214 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43212272 |
atagtcaaatagaagccactcatttggagagtattcttcctcagttgcttctagatttctaaagcatttgatgatttgaaatacccatctgtaactatta |
43212371 |
T |
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| Q |
215 |
ctctccctatcatggatctagtgaaaaattgatcaaaatttttggtgaaaggttgtatcagatacaactaattatcttaatggaaatttaaagggaatgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43212372 |
ctctccctatcatggatctagtgaaaaattgatcaagatttttggtgaaaggttgtatcagatacagctaattatcttaatggaaatttaaagggaatgt |
43212471 |
T |
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| Q |
315 |
ttctcttgcttctttat |
331 |
Q |
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||||||||||||||||| |
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| T |
43212472 |
ttctcttgcttctttat |
43212488 |
T |
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