View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_49 (Length: 341)
Name: NF20954_high_49
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 1093223 - 1093529
Alignment:
| Q |
16 |
atgctaatgtaagaaaagagttttatacgcgggatttgaacaaaaaagttatgtattactctaatgtactcttgtttagtggaaaacctgctaattggag |
115 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1093223 |
atgctaatgtaagaaaagatttttatacgcgggatttgaacaaaaaagttatgtattactctaatgtactcttgtttagtggaaaacctgctaattggag |
1093322 |
T |
|
| Q |
116 |
agatacatttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatgcaggtaatgaactcaatattaatttggattctcactc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1093323 |
agatacatttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatgcaggtaatgaactcaatattaatttggattctcactc |
1093422 |
T |
|
| Q |
216 |
tcaaaatcataatcaaatttatttgtatatctaggcatttatttatgggttatatatgtttctaatcttaaaaagtagatagatgattacttttatgata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1093423 |
tcaaaatcataatcaaatttatttgtatatctaggcatttatttatgggttatatatgtttctaatcttaaaaagtagatagatgataacttttatgata |
1093522 |
T |
|
| Q |
316 |
agcatgg |
322 |
Q |
| |
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||||||| |
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| T |
1093523 |
agcatgg |
1093529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 49465222 - 49464928
Alignment:
| Q |
16 |
atgctaatgtaagaaaagagttttatacgcgggatttgaacaaaaaagttatgtattactctaatgtactcttgtttagtggaaaacctgctaattggag |
115 |
Q |
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||||| ||||||||||||||||||| ||||| ||||| || ||||||||||||||||| |||||||||| |||||||||||| || ||||||||||||| |
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| T |
49465222 |
atgctgatgtaagaaaagagttttacacgcgtgatttaaagaaaaaagttatgtattattctaatgtacacttgtttagtgggcaagctgctaattggag |
49465123 |
T |
|
| Q |
116 |
agatacatttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatgcaggtaatgaactcaatattaatttggattctcactc |
215 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49465122 |
agatacatttggttttgctgttgctcctcatccattcaaacccgaggaagtgccaccaatatgcaggtaatgaactcaatattaatttggattctcactc |
49465023 |
T |
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| Q |
216 |
tcaaaatcataatcaaatttatttgtatatctaggcatttatttatgggttatatatgtttctaatcttaaaaagtagatagatgattactttta |
310 |
Q |
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|| |||||||||||| |||| | | |||||| |||||||||||||||||||| |||| | | |||||||||| |||||| ||| |||| |||| |
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| T |
49465022 |
tccaaatcataatcatatttttctcactatctaagcatttatttatgggttataaatgtcttttatcttaaaaaatagataaatgtttaccttta |
49464928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 22 - 248
Target Start/End: Original strand, 29462965 - 29463191
Alignment:
| Q |
22 |
atgtaagaaaagagttttatacgcgggatttgaacaaaaaagttatgtattactctaatgtactcttgtttagtggaaaacctgctaattggagagatac |
121 |
Q |
| |
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|||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||||| |||||||| |||| || |||||||||||||||||| |
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| T |
29462965 |
atgtaagaaaagagttttatacacgggatttaaagaaaaaagtttcgtattactctaatgtacgcttgtttaatggacaaggtgctaattggagagatac |
29463064 |
T |
|
| Q |
122 |
atttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatgcaggtaatgaactcaatattaatttggattctcactctcaaaa |
221 |
Q |
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|||||||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
29463065 |
atttggttttgctattgctcctgatccattcaatccagatgaagtgccacaaatatgcaggtaataaactcaatattaatttggattctcactctctaaa |
29463164 |
T |
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| Q |
222 |
tcataatcaaatttatttgtatatcta |
248 |
Q |
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||||||||| ||||| ||||||||||| |
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| T |
29463165 |
tcataatcagatttaattgtatatcta |
29463191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 19890577 - 19890741
Alignment:
| Q |
22 |
atgtaagaaaagagttttatacgcgggatttgaacaaaaaagttatgtattactctaatgtactcttgtttagtggaaaacctgctaattggagagatac |
121 |
Q |
| |
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||||||||||||||||||| || || ||||| || |||||||||||||||| ||| |||| | |||||||||||| || ||||||||||||||||||| |
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| T |
19890577 |
atgtaagaaaagagttttacactcgtgatttaaagaaaaaagttatgtatttctccaatggaaccttgtttagtggccaagctgctaattggagagatac |
19890676 |
T |
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| Q |
122 |
atttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatgcaggtaat |
186 |
Q |
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| ||||||||||| ||||||||||| ||||||||||| ||||| | ||| | ||||||||||||| |
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| T |
19890677 |
aattggttttgctgttgctcctcatccattcaaaccaaatgaactaccatccatatgcaggtaat |
19890741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 19844718 - 19844885
Alignment:
| Q |
20 |
taatgtaagaaaagagttttatacgcgggatttgaacaaaaaagttatgtattactctaatgtactcttgtttagtggaaaacctgctaattggagagat |
119 |
Q |
| |
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|||||| |||||||||||||||||||| ||||| | |||||||| |||||| ||| ||| | ||| |||| | | || ||||| ||||||||||| |
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| T |
19844718 |
taatgttagaaaagagttttatacgcgtgatttaagggaaaaagttgtgtatttctccaatacaaccttatttactagtcaagctgctgattggagagat |
19844817 |
T |
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| Q |
120 |
acatttggttttgctattgctcctcattcattcaaaccagatgaagtgccaccaatatgcaggtaatg |
187 |
Q |
| |
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||| |||| || | | |||||||| || ||||||||||||| ||| | |||||||||||||||||||| |
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| T |
19844818 |
acagttggattcgttgttgctcctgatccattcaaaccagaagaaataccaccaatatgcaggtaatg |
19844885 |
T |
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