View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_52 (Length: 337)
Name: NF20954_high_52
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 53755084 - 53754978
Alignment:
| Q |
10 |
catcatcaatttaccttttactattttcgttggctgttagcttgctggattccattacagcttaccacctactccatcctggttttgtccaaaatcacgt |
109 |
Q |
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| T |
53755084 |
catcatcaatttaccttttactattttcgttggctgttagcttgctggattccattatagcttaccacctactccatcctggttttgtccaaaatcacgt |
53754985 |
T |
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| Q |
110 |
gcgccac |
116 |
Q |
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||||||| |
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| T |
53754984 |
gcgccac |
53754978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 212 - 337
Target Start/End: Complemental strand, 53754882 - 53754757
Alignment:
| Q |
212 |
cagttatgataagtgagagtgaatctgttaatgaaagtttacaattacagtacttttttctgattgtnnnnnnntgtacgtaattttctaataacnnnnn |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
53754882 |
cagttatgataagtgagagtgaatctgttaatgaaagtttacaattacagtacttttttctgattgtaaaaaaatgtaagtaattttctaataacttttt |
53754783 |
T |
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| Q |
312 |
nnaacgaaaaatatatataattctcc |
337 |
Q |
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| T |
53754782 |
ttaaataaaaatatatataattctcc |
53754757 |
T |
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