View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_high_55 (Length: 319)

Name: NF20954_high_55
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_high_55
NF20954_high_55
[»] chr5 (5 HSPs)
chr5 (84-241)||(8628167-8628324)
chr5 (261-303)||(8628329-8628371)
chr5 (7-43)||(22913054-22913090)
chr5 (7-42)||(17545685-17545720)
chr5 (7-40)||(4434007-4434040)
[»] chr8 (8 HSPs)
chr8 (7-42)||(7022008-7022043)
chr8 (7-42)||(3890439-3890474)
chr8 (7-42)||(3890616-3890651)
chr8 (7-42)||(31347782-31347817)
chr8 (8-42)||(15187590-15187624)
chr8 (7-40)||(7017865-7017898)
chr8 (7-43)||(17841850-17841886)
chr8 (7-43)||(40780129-40780165)
[»] chr6 (3 HSPs)
chr6 (7-42)||(9752245-9752280)
chr6 (7-42)||(11548588-11548623)
chr6 (7-43)||(32702234-32702270)
[»] chr3 (5 HSPs)
chr3 (7-43)||(8362045-8362081)
chr3 (7-42)||(9797029-9797064)
chr3 (7-42)||(41883223-41883258)
chr3 (8-42)||(47738135-47738169)
chr3 (7-43)||(34482910-34482946)
[»] chr1 (4 HSPs)
chr1 (7-43)||(19015433-19015469)
chr1 (7-43)||(36966708-36966744)
chr1 (7-43)||(37821834-37821870)
chr1 (7-43)||(9910293-9910329)
[»] chr7 (3 HSPs)
chr7 (7-42)||(15238412-15238447)
chr7 (7-43)||(18037007-18037043)
chr7 (7-43)||(35444587-35444623)
[»] chr4 (5 HSPs)
chr4 (7-42)||(24392697-24392732)
chr4 (7-42)||(33530688-33530723)
chr4 (7-43)||(24128268-24128304)
chr4 (7-43)||(36073379-36073415)
chr4 (7-43)||(47290095-47290131)
[»] chr2 (4 HSPs)
chr2 (7-42)||(21936111-21936146)
chr2 (8-42)||(13354876-13354910)
chr2 (7-37)||(22591517-22591547)
chr2 (7-43)||(23268062-23268098)
[»] scaffold0471 (1 HSPs)
scaffold0471 (7-43)||(12871-12907)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 84 - 241
Target Start/End: Original strand, 8628167 - 8628324
Alignment:
Q  84 cctattttctatttacagaacaaacagttcttttcttcattaataatcaaaaaaccaatacataaagaagattggtacaaaacattcagggattaactat 183  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  8628167 cctattttctatttacagaacaaacagtttttttcttcattaataatcaaaaaaccaatacataaagaagattggtacacaacattcagggagtaactat 8628266  T
Q  184 aaatcggactactcttcattgatgagcaacttgattcattaaatctcttcatgataca 241  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8628267 aaatccgactactcttcattgatgagcaacttgattcattaaatctcttcatgataca 8628324  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 8628329 - 8628371
Alignment:
Q  261 agcttgaaatatatcatttccattcataatacaagcttctatt 303  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  8628329 agcttgaaatatatcatttccattcataatacaagcttgtatt 8628371  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 22913054 - 22913090
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||| ||||||||||||||||||||||    
T  22913054 gattattctgccatgtcattcttgaatttttcttgaa 22913090  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 17545685 - 17545720
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttga 42  Q
    |||||||||||||| |||||||||||||||||||||    
T  17545685 gattattctgccatgtcattcttgaatttttcttga 17545720  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 4434007 - 4434040
Alignment:
Q  7 gattattctgccatatcattcttgaatttttctt 40  Q
    |||||||||||||||||||||||||| |||||||    
T  4434007 gattattctgccatatcattcttgaaattttctt 4434040  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 7022043 - 7022008
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttga 42  Q
    ||||||||||||||||||||||||||||||||||||    
T  7022043 gattattctgccatatcattcttgaatttttcttga 7022008  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 3890474 - 3890439
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttga 42  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3890474 gattattctgccatatcattcttgaatctttcttga 3890439  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 3890616 - 3890651
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttga 42  Q
    |||||||||||||| |||||||||||||||||||||    
T  3890616 gattattctgccatgtcattcttgaatttttcttga 3890651  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 31347782 - 31347817
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttga 42  Q
    |||||||||||||| |||||||||||||||||||||    
T  31347782 gattattctgccatgtcattcttgaatttttcttga 31347817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 15187624 - 15187590
Alignment:
Q  8 attattctgccatatcattcttgaatttttcttga 42  Q
    ||||||||||||||||||||||||| |||||||||    
T  15187624 attattctgccatatcattcttgaaattttcttga 15187590  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 7017865 - 7017898
Alignment:
Q  7 gattattctgccatatcattcttgaatttttctt 40  Q
    |||||||||||||| |||||||||||||||||||    
T  7017865 gattattctgccatgtcattcttgaatttttctt 7017898  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 17841850 - 17841886
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  17841850 gattattctgccatgtcattcttgaaattttcttgaa 17841886  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 40780129 - 40780165
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  40780129 gattattctgccatgtcattcttgaaattttcttgaa 40780165  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 9752245 - 9752280
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttga 42  Q
    ||||||||||||||||||||||||||||||||||||    
T  9752245 gattattctgccatatcattcttgaatttttcttga 9752280  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 11548588 - 11548623
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttga 42  Q
    |||||||||||||| |||||||||||||||||||||    
T  11548588 gattattctgccatgtcattcttgaatttttcttga 11548623  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 32702270 - 32702234
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  32702270 gattattctgccatatcattcttgaaattttcatgaa 32702234  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 8362045 - 8362081
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||| ||||||||||||||||||||||    
T  8362045 gattattctgccatgtcattcttgaatttttcttgaa 8362081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 9797029 - 9797064
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttga 42  Q
    |||||||||||||| |||||||||||||||||||||    
T  9797029 gattattctgccatgtcattcttgaatttttcttga 9797064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 41883223 - 41883258
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttga 42  Q
    |||||||||||||| |||||||||||||||||||||    
T  41883223 gattattctgccatgtcattcttgaatttttcttga 41883258  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 47738169 - 47738135
Alignment:
Q  8 attattctgccatatcattcttgaatttttcttga 42  Q
    |||||||||||||||||||||||||| ||||||||    
T  47738169 attattctgccatatcattcttgaatatttcttga 47738135  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 34482910 - 34482946
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  34482910 gattattctaccatatcattcttgaaattttcttgaa 34482946  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 19015469 - 19015433
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||||||||||||||| ||||||||||    
T  19015469 gattattctgccatatcattcttgaaattttcttgaa 19015433  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 36966708 - 36966744
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||||||||||||||| ||||||||||    
T  36966708 gattattctgccatatcattcttgaaattttcttgaa 36966744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 37821834 - 37821870
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||||||||||||||| ||||||||||    
T  37821834 gattattctgccatatcattcttgaaattttcttgaa 37821870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 9910293 - 9910329
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  9910293 gattattctgccatgtcattcttgaaattttcttgaa 9910329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 15238447 - 15238412
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttga 42  Q
    |||||||||||||| |||||||||||||||||||||    
T  15238447 gattattctgccatgtcattcttgaatttttcttga 15238412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 18037043 - 18037007
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||| |||||||| |||||||||||||    
T  18037043 gattattctgccatgtcattcttaaatttttcttgaa 18037007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 35444623 - 35444587
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  35444623 gattattctgccatgtcattcttgaaattttcttgaa 35444587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 24392732 - 24392697
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttga 42  Q
    |||||||||||||| |||||||||||||||||||||    
T  24392732 gattattctgccatgtcattcttgaatttttcttga 24392697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 33530688 - 33530723
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttga 42  Q
    |||||||||||||| |||||||||||||||||||||    
T  33530688 gattattctgccatgtcattcttgaatttttcttga 33530723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 24128304 - 24128268
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  24128304 gattattctgccatgtcattcttgaaattttcttgaa 24128268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 36073415 - 36073379
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  36073415 gattattctgccatgtcattcttgaaattttcttgaa 36073379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 47290131 - 47290095
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  47290131 gattattctgccatgtcattcttgaaattttcttgaa 47290095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 21936146 - 21936111
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttga 42  Q
    |||||||||||||||||||||||||| |||||||||    
T  21936146 gattattctgccatatcattcttgaaattttcttga 21936111  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 13354910 - 13354876
Alignment:
Q  8 attattctgccatatcattcttgaatttttcttga 42  Q
    ||||||||||||||||||||||||| |||||||||    
T  13354910 attattctgccatatcattcttgaaattttcttga 13354876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 22591547 - 22591517
Alignment:
Q  7 gattattctgccatatcattcttgaattttt 37  Q
    |||||||||||||||||||||||||||||||    
T  22591547 gattattctgccatatcattcttgaattttt 22591517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 23268062 - 23268098
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  23268062 gattattctgccatgtcattcttgaaattttcttgaa 23268098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 12907 - 12871
Alignment:
Q  7 gattattctgccatatcattcttgaatttttcttgaa 43  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  12907 gattattctgccatgtcattcttgaaattttcttgaa 12871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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