View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20954_high_64 (Length: 298)
Name: NF20954_high_64
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_64 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 33811295 - 33811552
Alignment:
| Q |
18 |
tggtttccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811295 |
tggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaatt |
33811394 |
T |
|
| Q |
118 |
ctaccatgtcagcaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcac |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811395 |
ctaccatgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcac |
33811494 |
T |
|
| Q |
218 |
acggttcaaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaaca |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33811495 |
acggttcaaaaccctctataaatagagaagagtttcagcaatgaaa-cacaccacaaca |
33811552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 33816213 - 33816470
Alignment:
| Q |
18 |
tggtttccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816213 |
tggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaatt |
33816312 |
T |
|
| Q |
118 |
ctaccatgtcagcaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcac |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816313 |
ctaccatgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcac |
33816412 |
T |
|
| Q |
218 |
acggttcaaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaaca |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33816413 |
acggttcaaaaccctctataaatagagaagagtttcagcaatgaaa-cacaccacaaca |
33816470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 33807641 - 33807898
Alignment:
| Q |
18 |
tggtttccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807641 |
tggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaatt |
33807740 |
T |
|
| Q |
118 |
ctaccatgtcagcaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcac |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807741 |
ctaccatgtcagtaacaaattgacaaacttggcaatgggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcac |
33807840 |
T |
|
| Q |
218 |
acggttcaaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaaca |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33807841 |
acggttcaaaaccctctataaatagagaagagtttcagcaatgaaa-cacaccacaaca |
33807898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 50603003 - 50603083
Alignment:
| Q |
198 |
gaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaacata |
278 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||| | || |||||||||||||| |
|
|
| T |
50603003 |
gaaccaagcatttaatgcttacggttcatttctctctataaatagagaagagcttcagcaaagcaaacacaccacaacata |
50603083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 31152298 - 31152242
Alignment:
| Q |
220 |
ggttcaaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaaca |
276 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |||||||| | || |||||||||||| |
|
|
| T |
31152298 |
ggttcaaatctctctataaatagagaagagcttcagcaaagcaatcacaccacaaca |
31152242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University