View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20954_high_68 (Length: 292)
Name: NF20954_high_68
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_68 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 49917180 - 49916918
Alignment:
| Q |
19 |
atatacctcttgtttagtaacaacatgaatctcaattttgagaaatttttatgaattttaggtattgagtgatccgcaaagaaggaatgtttatgatcag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49917180 |
atatacctcttgtttagtaacaacatgaatctcaattttgagaaatttttatgaattttaggtattgagtgatccgcaaagaaggaatgtttatgatcag |
49917081 |
T |
|
| Q |
119 |
cttggagaacaagggttaaaagaaaggccatcaccagaaactgagtcaccaagtggattttatccaagaagtgcagaggatatctttgcagaattctttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49917080 |
cttggagaacaagggttaaaagaaaggccatcaccagaaactgagtcaccaagtggattttatccaagaagtgcagaggatatctttgcagaattctttg |
49916981 |
T |
|
| Q |
219 |
gaagtagtcctttgaattttggatcatctggaccggggaggtccaagagatttccatctgatg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
49916980 |
gaagtagtcctttgaattttggatcatctggaccagggaggtccaagagatttccatctgatg |
49916918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University