View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20954_high_7 (Length: 686)
Name: NF20954_high_7
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_7 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0181 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 1 - 686
Target Start/End: Complemental strand, 36735276 - 36734593
Alignment:
| Q |
1 |
tctttgctggtatctcatagccttggattgtgcacttttcagatgattctctaacaattaatggacctgttgggtgaatccttagtgtttctttgactat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36735276 |
tctttgctggtatctcatagccttggattgtgcacttttcagatgattctctaacaattaatggacctgttgggtgaatccttagtgtttctttgactat |
36735177 |
T |
|
| Q |
101 |
tgcttgtaggtaaggaaggttgataatgtctgattcttctactattctattatttccaactacatcattgatctcttgtcttgctatttccatcatatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36735176 |
tgcttgtaggtaaggaaggttgataatgtctgattcttctactattctattatttccaactacatcattgatctcttgtcttgctatttccatcatatgt |
36735077 |
T |
|
| Q |
201 |
gggttgttaattagctctgccaatgcccattctatggttagggctgaagtgtctgttccagcaataaatatatcctgccagatcataaaggttatatcat |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36735076 |
gggttgttaattagctctgccagtgcccattctatggttagggctgaagtgtctgttccagcaataaatatgtcctgccagatcataaaggttatatcat |
36734977 |
T |
|
| Q |
301 |
caattttttgtcaagtttaaaaaattgtattgtaagtccctcctttcaattatggtataattgtc-taaaatgtttagattagaagacaagcacaacact |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36734976 |
caattttttgtcaagtttaaaaaattgtattgcaagtccctcctttcaattatggtataattgtcataaaatgtttagattagaagacaagcacaacact |
36734877 |
T |
|
| Q |
400 |
ttaagcatgagttattgatatttactttaagcatataaaaaatttagattagaaagtcaagtgatccaaagagaaaaggcatttgtgatctaaaatatgg |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36734876 |
ttaagcatgagttattgatatttactttaagcatataaaaaatttagattagaaagtcaagtgatccaaagagaaaaagcatttgtgatctaaaatatgg |
36734777 |
T |
|
| Q |
500 |
gcgcagtaagttaagtatgattgatgattgttttaaaaagaatctattatcgtatttacttaaaaagttagtgcaacaattattatagtgtagctagnnn |
599 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
36734776 |
acgcagtaagttaagtatgatcgatgattgttttaaaaagaatctattatcgtatttacttaaagagttagtgcaacaattattacagtgtagctagttt |
36734677 |
T |
|
| Q |
600 |
nnnnnnctttctttcaagtttggcattgtataagtgaataaaagaaaaatgcaatattgttcatagactcaactagatatcgactat |
686 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
36734676 |
tttt---tttctttcaagtttggcattgtataagtaaataaaaggaaaatgcaatattggtcgtagacgtaactagatatcgactat |
36734593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 10052 - 10159
Alignment:
| Q |
171 |
atctcttgtcttgctatttccatcatatgtgggttgttaattagctctgccaatgcccattctatggttagggctgaagtgtctgttccagcaataaata |
270 |
Q |
| |
|
|||||||| |||||| | ||||| |||||||||||||| || | ||| ||||| ||||| || || |||| || || ||||||||||| |||||||| | |
|
|
| T |
10052 |
atctcttgccttgctttctccattatatgtgggttgtttatcaactcagccaaagcccactccattgttatcgcagatgtgtctgttcccgcaataaaca |
10151 |
T |
|
| Q |
271 |
tatcctgc |
278 |
Q |
| |
|
| |||||| |
|
|
| T |
10152 |
tgtcctgc |
10159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University