View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_70 (Length: 281)
Name: NF20954_high_70
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_70 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 10306841 - 10307119
Alignment:
| Q |
1 |
ctgacctcctccgcgctctccctaggtgttgtcacgcctttcactccgactgtattgacaattggctccgttcttccaacctctcatgttgtccgctttg |
100 |
Q |
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| T |
10306841 |
ctgacctcctccgcgctctccctaggtgttgtcacgcctttcactccgactgtattgacaattggctccgttcttccaacctctcatgttgtccgctttg |
10306940 |
T |
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| Q |
101 |
ccgttccaccattttcgcttcagaatccgacctcgcggcgattctccgatcaccttccgacagtttccgagttgaaattggaaatgtgacttatccagaa |
200 |
Q |
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| T |
10306941 |
ccgttccacaattttcgcttcagaatccgacctcgcggcgattctccgatcaccttccgacagtttccgagttgaaattggaaatgtgacttatccagaa |
10307040 |
T |
|
| Q |
201 |
gctgtcggcggagacgcattgtcatcatattccattggaggatcattcgattatcgtgtaatggaggtatcacaggttc |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10307041 |
gctgtcggcggagacgcattgtcatcatattccattggaggatcattcgattatcgtgtaatggaggtatcgcaggttc |
10307119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 1722082 - 1722195
Alignment:
| Q |
76 |
ccaacctctcatgttgtccgctttgccgttccaccattttcgcttcagaatccgacctcgcggcgattctccgatcaccttccgacagtttccgagttga |
175 |
Q |
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|||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
1722082 |
ccaacctctcatgttgtcggctctgccattccaccattttcgcttcagaattcgacctcgccgcgattctccgatcaccttccgacagtttccgagatga |
1722181 |
T |
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| Q |
176 |
aattggaaatgtga |
189 |
Q |
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| T |
1722182 |
aattggaaatgtga |
1722195 |
T |
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