View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20954_high_74 (Length: 273)
Name: NF20954_high_74
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_74 |
 |  |
|
| [»] scaffold0413 (1 HSPs) |
 |  |  |
|
| [»] scaffold0013 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 41340778 - 41341015
Alignment:
| Q |
1 |
ataagtaagaataatttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| | |||||||| |
|
|
| T |
41340778 |
ataagtaagaataatttttaccataaaaatacattttaattatttttcttt-----------------ctaccactatttaatgacacatctctaacact |
41340860 |
T |
 |
| Q |
101 |
tagtatggacgtatgggaaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactcacagctacggttaagacacatttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
41340861 |
tagtatggacgtatgggaaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactcacaactacggttaagacacgtttt |
41340960 |
T |
 |
| Q |
201 |
ctctcactccaagaattatttgacggatggacggttgaaaacgaaggcgtagtcg |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41340961 |
ctctcactccaagaattatttgacggatggacggttgaaaacgaaggcgtagtcg |
41341015 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 18292852 - 18292986
Alignment:
| Q |
16 |
ttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatg |
115 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| |||||||| ||||||||| ||| |||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
18292852 |
ttttaccataaaaatacattttaactatttttctttttaaaagacaagaattgctacctctacttaataacacag-cctagcacttagtatggacgtatg |
18292950 |
T |
 |
| Q |
116 |
gg-aaaaagcccttacctagagagcttttcttcctag |
151 |
Q |
| |
|
|| ||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
18292951 |
ggaaaaaaacccttaccttgagag-ttttcttcctag |
18292986 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 32735501 - 32735586
Alignment:
| Q |
92 |
cctaacacttagtatggacgtatggg-aaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactc |
176 |
Q |
| |
|
|||| ||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
32735501 |
cctagcacttagtaagaacgtatggggaaaaagcccttacctcgagagcttttcttcctagccgaactctaaaccacctcaaactc |
32735586 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 22403757 - 22403668
Alignment:
| Q |
122 |
agcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactcacagctacggttaagacacattttctctcactcca |
211 |
Q |
| |
|
||||||||||| |||| ||||||||||||| |||||||||||| |||| ||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
22403757 |
agcccttacctcgagatcttttcttcctagccgaactctaaaccaccttaaactcacagctacggtgcagacacgatttctctcgctcca |
22403668 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 29270735 - 29270654
Alignment:
| Q |
33 |
attttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtat |
114 |
Q |
| |
|
||||||||| |||||||||| | |||||||| |||||||||||||| |||| |||| |||||||||||||||||||||||| |
|
|
| T |
29270735 |
attttaattgtttttcttttcaaaagacaagaattgctaccactatttaatagcacaaccctaacacttagtatggacgtat |
29270654 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 40447554 - 40447433
Alignment:
| Q |
11 |
ataatttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggac |
110 |
Q |
| |
|
|||| |||||| || |||| || |||||| ||||||||||||||||||||||| ||| ||||| ||| |||| ||| || ||| |||||||||||||| |
|
|
| T |
40447554 |
ataaattttactatgaaaatacgttttaactatttttctttttagaagacaagaattactacctctacttaataacatag-tctagcacttagtatggac |
40447456 |
T |
 |
| Q |
111 |
gtat-gggaaaaagcccttacct |
132 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
40447455 |
gtatggggaaaaagcccttacct |
40447433 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 44788615 - 44788527
Alignment:
| Q |
33 |
attttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatgggaaaa |
121 |
Q |
| |
|
||||||||| |||||||||| | ||||||| ||| |||||||||| |||| |||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
44788615 |
attttaattgtttttcttttcaaaagacaataattactaccactatttaataacacagtcctaacacttagtaagaacgtatgggaaaa |
44788527 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 40729513 - 40729629
Alignment:
| Q |
16 |
ttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatg |
115 |
Q |
| |
|
||||||||| |||| || ||||||| ||||||||||||| |||||||| ||||||||| ||| |||| | ||| ||| | ||| |||||||||||||| |
|
|
| T |
40729513 |
ttttaccatgaaaatacgttttaatcatttttctttttaaaagacaagaattgctacctctacttaataatacaaccc-agcacctagtatggacgtata |
40729611 |
T |
 |
| Q |
116 |
ggaaaaagcccttaccta |
133 |
Q |
| |
|
| |||||| ||||||||| |
|
|
| T |
40729612 |
gaaaaaagtccttaccta |
40729629 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 36732566 - 36732647
Alignment:
| Q |
166 |
acctcaaactcacagctacggttaagacacattttctctcactccaagaatta-tttgacggatggacggttgaaaacgaag |
246 |
Q |
| |
|
|||||||||||| | |||| || |||||||||||||||||||||| |||||| ||||||| |||| ||||||||||||| |
|
|
| T |
36732566 |
acctcaaactcataactactgtgcagacacattttctctcactccaggaattattttgacgatcggaccgttgaaaacgaag |
36732647 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 1193685 - 1193599
Alignment:
| Q |
46 |
ttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatgggaaaaagcccttacct |
132 |
Q |
| |
|
||||||| | |||||||| ||||||||| || | |||| ||| || ||| ||||||||| | || ||||||||||||||||||||| |
|
|
| T |
1193685 |
ttcttttcaaaagacaagaattgctacccctgtttaataacaaagtactagcacttagtaagaacttatgggaaaaagcccttacct |
1193599 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 28267759 - 28267793
Alignment:
| Q |
98 |
acttagtatggacgtatgggaaaaagcccttacct |
132 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28267759 |
acttagtatggacgtatgggaaaaaacccttacct |
28267793 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 36732450 - 36732507
Alignment:
| Q |
16 |
ttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctacc |
73 |
Q |
| |
|
||||||||| |||| | ||||||||||||||||||||| |||||||| |||| |||| |
|
|
| T |
36732450 |
ttttaccatgaaaatatgttttaattatttttctttttaaaagacaagaattgttacc |
36732507 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 12196690 - 12196905
Alignment:
| Q |
7 |
aagaataatttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtat |
106 |
Q |
| |
|
|||| ||||||| ||| |||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||| ||| || ||| ||||||||| |
|
|
| T |
12196690 |
aagattaattttcaccgtaaaaatacattttaattatttttctttttaaaagacaagaattgctaccactatttaataacatagtccttgcacttagtaa |
12196789 |
T |
 |
| Q |
107 |
ggacgtatggg-aaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactcacagctacggttaagacacattttctctc |
205 |
Q |
| |
|
| | ||||||| ||||||||||||||| | || |||||||||||| |||||||||||| |||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
12196790 |
gaatgtatggggaaaaagcccttaccttgtaagtttttcttcctagccgaactctaaaccacctcaaactcacagctacggtgcagacacgttttctctc |
12196889 |
T |
 |
| Q |
206 |
actccaagaattattt |
221 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
12196890 |
actccaggaattattt |
12196905 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 49170410 - 49170605
Alignment:
| Q |
16 |
ttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatg |
115 |
Q |
| |
|
||||||||| |||| | ||||||||||||||||||||| |||||||| |||||||| ||| |||| ||||||| |||||||||||||||||||||| |
|
|
| T |
49170410 |
ttttaccatgaaaataggttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcg-taacacttagtatggacgtatg |
49170508 |
T |
 |
| Q |
116 |
gg-aaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactcacagctacggttaagacacattttctctcactcca |
211 |
Q |
| |
|
|| ||||| ||||||||| ||||||||||||| |||| |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
49170509 |
gggaaaaaacccttacctcgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaagacacgttttctctcactcca |
49170605 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 10289298 - 10289474
Alignment:
| Q |
1 |
ataagtaagaataatttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacact |
100 |
Q |
| |
|
|||| ||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||| |||| |||| |
|
|
| T |
10289298 |
ataattaaaaataatttttaccataacaatacattttaattgtttttctttttagaagacaagcattactaccattacttaatgacacagtcctagcact |
10289397 |
T |
 |
| Q |
101 |
tagtatggacgtat-gggaaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactc |
176 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | |||||| |||||||| | |||||||||| ||||||||||| |
|
|
| T |
10289398 |
tagtatggacgtatggggaaaaagcccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc |
10289474 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 12911837 - 12911970
Alignment:
| Q |
16 |
ttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatg |
115 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| ||||||| ||||||||| || |||| ||||| || || ||||||||||||||||||| |
|
|
| T |
12911837 |
ttttaccatgaaaatacattttaattatttttctttttaaaagacaaaaattgctacctttacttaataacacaacc-tagcacttagtatggacgtatg |
12911935 |
T |
 |
| Q |
116 |
ggaaaaagcccttacctagagagcttttcttccta |
150 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| |
|
|
| T |
12911936 |
ggaaaaaacccttacctcaagagcttttcttccta |
12911970 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 48654443 - 48654522
Alignment:
| Q |
98 |
acttagtatggacgtatggg-aaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactc |
176 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| || ||||||| ||||||| |||||||||||| ||||||||||| |
|
|
| T |
48654443 |
acttagtatggacgtatggggaaaaaacccttacctcgaaagcttttgttcctagccgaactctaaaccacctcaaactc |
48654522 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 9993378 - 9993291
Alignment:
| Q |
46 |
ttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatggg-aaaaagcccttacct |
132 |
Q |
| |
|
||||||| | |||||||| |||| |||| |||| |||| ||| ||||||| ||||||||| | |||| |||| ||||||||||||||| |
|
|
| T |
9993378 |
ttcttttcaaaagacaagaattgttacccctatttaataacaaagccctagcacttagtaagaacgtgtggggaaaaagcccttacct |
9993291 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 43278354 - 43278485
Alignment:
| Q |
1 |
ataagtaagaataatttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacact |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43278354 |
ataattaagaataatttttaccataaaaatacattttaattatttttctttttataagacaagcattgctaccactatttaatgacacagccctaacact |
43278453 |
T |
 |
| Q |
101 |
tagtatggacgtatgggaaaaagcccttacct |
132 |
Q |
| |
|
|| |||||||||||| |||||||||||||||| |
|
|
| T |
43278454 |
taatatggacgtatgagaaaaagcccttacct |
43278485 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 7337201 - 7337377
Alignment:
| Q |
1 |
ataagtaagaataatttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacact |
100 |
Q |
| |
|
|||| ||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||| |||| |||| |
|
|
| T |
7337201 |
ataattaaaaataatttttaccataacaatacattttaattgtttttctttttagaagacaagcatttctaccattacttaatgacacagtcctagcact |
7337300 |
T |
 |
| Q |
101 |
tagtatggacgtat-gggaaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactc |
176 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | |||||| |||||||| | |||||||||| ||||||||||| |
|
|
| T |
7337301 |
tagtatggacgtatggggaaaaagcccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc |
7337377 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 11968095 - 11968180
Alignment:
| Q |
98 |
acttagtatggacgtatgggaaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactcacagcta |
183 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| | |||||||||| |||||||||||||||||| |
|
|
| T |
11968095 |
acttagtatggacgtatgggaaaaaacccttacctcgagaacttttcttcctagccaaactctaaaccacctcaaactcacagcta |
11968180 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 246
Target Start/End: Complemental strand, 16975266 - 16975131
Alignment:
| Q |
119 |
aaaagcccttacctagagagcttttcttcctaggcgaactctaaac-------aacctcaaactcacagctacggttaagacacattttctctcactcca |
211 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| | ||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
16975266 |
aaaagcccttacctcgtaagcttttcttcctagccaaacactaaactacctcaaacctcaaactcacagctacggtacagacacattttctgtcactcca |
16975167 |
T |
 |
| Q |
212 |
agaatta-tttgacggatggacggttgaaaacgaag |
246 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
16975166 |
ggaattattttgacgattggaccgttgaaaacgaag |
16975131 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 17542815 - 17542914
Alignment:
| Q |
33 |
attttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatgggaaaaagcccttacct |
132 |
Q |
| |
|
||||||||| |||||||||| | ||||||| |||||||||||||| |||| |||||| ||||| |||||||| | ||||||||| ||||| |||||||| |
|
|
| T |
17542815 |
attttaattgtttttcttttcaagagacaagaattgctaccactatttaataacacagtcctaaaacttagtaagaacgtatggggaaaaggccttacct |
17542914 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 9104274 - 9104174
Alignment:
| Q |
33 |
attttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtat-gggaaaaagcccttacc |
131 |
Q |
| |
|
||||| ||| |||||||||| | |||||||| |||||||||||||| |||| |||||| |||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
9104274 |
atttttattgtttttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaaaaacgtatggggaaaaaacccttacc |
9104175 |
T |
 |
| Q |
132 |
t |
132 |
Q |
| |
|
| |
|
|
| T |
9104174 |
t |
9104174 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 8730895 - 8730831
Alignment:
| Q |
39 |
attatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttag |
103 |
Q |
| |
|
|||||||||||||||| |||||||| ||| | || ||||| |||| ||| ||||||| ||||||| |
|
|
| T |
8730895 |
attatttttctttttaaaagacaagaattaccactactatttaataacatagccctagcacttag |
8730831 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 9082782 - 9082718
Alignment:
| Q |
39 |
attatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttag |
103 |
Q |
| |
|
|||||||||||||||| |||||||| ||| | || ||||| |||| ||| ||||||| ||||||| |
|
|
| T |
9082782 |
attatttttctttttaaaagacaagaattaccactactatttaataacatagccctagcacttag |
9082718 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 43407874 - 43408025
Alignment:
| Q |
1 |
ataagtaagaataatttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacact |
100 |
Q |
| |
|
|||| ||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||| |||| |||| |
|
|
| T |
43407874 |
ataattaaaaataatttttaccataacaatacattttaattgtttttctttttagaagacaagcatttctaccattacttaatgacacagtcctagcact |
43407973 |
T |
 |
| Q |
101 |
tagtatggacgtat-gggaaaaagcccttacctagagagcttttcttcctag |
151 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43407974 |
tagtatggacgtatggggaaaaagcccttacctcgagagcttttcttcctag |
43408025 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 8421672 - 8421495
Alignment:
| Q |
34 |
ttttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatggg-aaaaagcccttacct |
132 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| ||| |||| |||||||| || ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
8421672 |
ttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcc-tagcacttagtatgtacgtatggggaaaaagcccttacct |
8421574 |
T |
 |
| Q |
133 |
agagagcttttcttcctaggcgaactctaaacaacctcaaactcacagctacggttaagacacattttctctcactcca |
211 |
Q |
| |
|
||||||||||||| |||| |||||||||||| |||||||||||||||||||||| |||||| ||||||||| |||| |
|
|
| T |
8421573 |
tgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaagacatggtttctctcagtcca |
8421495 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 26317279 - 26317178
Alignment:
| Q |
31 |
acattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatgggaaaaagcccttac |
130 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||| |||||||||||||| |||| |||||||||| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
26317279 |
acattttaactatttttcttcttaaaagacaagaattgctaccactatttaataccacagccctagcacttattatggacgtttgggaaaaagcccttac |
26317180 |
T |
 |
| Q |
131 |
ct |
132 |
Q |
| |
|
|| |
|
|
| T |
26317179 |
ct |
26317178 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 21264753 - 21264884
Alignment:
| Q |
46 |
ttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatggg-aaaaagcccttacctagagagcttttc |
144 |
Q |
| |
|
||||||| | |||||||| ||||||||| || | |||| ||| ||||||| ||||||||| | ||||||||| ||||||||||||||| | |||||| | |
|
|
| T |
21264753 |
ttcttttcaaaagacaagaattgctacccctgtttaatcacaaagccctagcacttagtaagaacgtatggggaaaaagcccttacctcgtaagctttcc |
21264852 |
T |
 |
| Q |
145 |
ttcctaggcgaactctaaacaacctcaaactc |
176 |
Q |
| |
|
||||||| | |||||||||| ||||||||||| |
|
|
| T |
21264853 |
ttcctagccaaactctaaaccacctcaaactc |
21264884 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 36386859 - 36386929
Alignment:
| Q |
35 |
tttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagta |
105 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| |||| |||||| |||||||||||||| |
|
|
| T |
36386859 |
tttaattatttttctttttaaaagacaagaattgctaccactatttaataacacagtcctaacacttagta |
36386929 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 338181 - 338060
Alignment:
| Q |
11 |
ataatttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggac |
110 |
Q |
| |
|
|||| |||||| || |||| || |||||| ||||||||||||||||||||||| ||| ||||| ||| |||| ||| || ||| |||||||||||||| |
|
|
| T |
338181 |
ataaattttactatgaaaatacgttttaactatttttctttttagaagacaagaattactacctctacttaataacatag-tctagcacttagtatggac |
338083 |
T |
 |
| Q |
111 |
gtat-gggaaaaagcccttacct |
132 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
338082 |
gtatggggaaaaagcccttacct |
338060 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 6836039 - 6835953
Alignment:
| Q |
46 |
ttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatggg-aaaaagcccttacc |
131 |
Q |
| |
|
||||||| | |||||||| ||||||||| |||| |||| | | ||||||| ||||||||| | ||||||||| |||||||||||||| |
|
|
| T |
6836039 |
ttcttttcaaaagacaagaattgctacccctatttaatcataaagccctagcacttagtaagaacgtatggggaaaaagcccttacc |
6835953 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 40459022 - 40458887
Alignment:
| Q |
16 |
ttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtat- |
114 |
Q |
| |
|
||||||||| |||| || ||||||||||||||||||||| |||||||| ||||||||| ||| |||| |||||| ||| |||||||||||||||||| |
|
|
| T |
40459022 |
ttttaccatgaaaatacgttttaattatttttctttttaaaagacaagaattgctacctctacttaataacacag-tctagcacttagtatggacgtatg |
40458924 |
T |
 |
| Q |
115 |
gggaaaaagcccttacctagagagcttttcttcctag |
151 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40458923 |
gggaaaaagcccttacctcgagagcttttcttcctag |
40458887 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 69350 - 69251
Alignment:
| Q |
33 |
attttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatgggaaaaagcccttacct |
132 |
Q |
| |
|
||||||||| |||||||||| | ||||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
69350 |
attttaattgtttttcttttcaagagacaagaattgctaccactatttaataacacagtcctaacacttagtatggacgtatgggaaaaaacccttacct |
69251 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 55162253 - 55162137
Alignment:
| Q |
16 |
ttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatg |
115 |
Q |
| |
|
||||||||| |||| || ||||||||||||||||||||| |||||||| |||||||| ||| |||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
55162253 |
ttttaccatgaaaatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag-tctagcacttagtatggacgtatg |
55162155 |
T |
 |
| Q |
116 |
-ggaaaaagcccttacct |
132 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
55162154 |
aggaaaaaaaccttacct |
55162137 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 41868610 - 41868570
Alignment:
| Q |
92 |
cctaacacttagtatggacgtatgggaaaaagcccttacct |
132 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41868610 |
cctaatacttagtatggacgtatgggaaaaagcacttacct |
41868570 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 44436172 - 44436065
Alignment:
| Q |
24 |
taaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatgggaaaaag |
123 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||| || || |||||||||| ||||||| |||||||| |
|
|
| T |
44436172 |
taaaaatacattttaattatttttctttttaaaagacaagaattgctaccactatttaataacacatccttagcacttagtattgacgtat-ggaaaaag |
44436074 |
T |
 |
| Q |
124 |
cccttacct |
132 |
Q |
| |
|
||||||||| |
|
|
| T |
44436073 |
cccttacct |
44436065 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 22816478 - 22816608
Alignment:
| Q |
22 |
cataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtat-gggaaa |
120 |
Q |
| |
|
|||||||| | ||||||||| |||||||||| | ||||||| ||||| |||||||| |||| |||||| |||||||||||| | | |||||| |||||| |
|
|
| T |
22816478 |
cataaaaaaatattttaattgtttttcttttcaagagacaagaattgcaaccactatttaataacacagtcctaacacttagcaagaacgtatggggaaa |
22816577 |
T |
 |
| Q |
121 |
aagcccttacctagagagcttttcttcctag |
151 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |
|
|
| T |
22816578 |
aagcccttacctcgagagctttccttcctag |
22816608 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 40841555 - 40841652
Alignment:
| Q |
33 |
attttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatgggaaaaagcccttac |
130 |
Q |
| |
|
||||| ||| |||||||||| | |||||||| |||||||||||||| |||| |||||| |||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
40841555 |
atttttattgtttttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaagaacgtatgggaaaaagcccttac |
40841652 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 41958468 - 41958584
Alignment:
| Q |
16 |
ttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatg |
115 |
Q |
| |
|
||||||| ||||| ||||||||||||| | ||||||| |||||||| ||||| |||||||| |||| ||||||| ||| |||||| |||||| ||||| |
|
|
| T |
41958468 |
ttttaccctaaaactacattttaattatctgcctttttaaaagacaagaattgccaccactatttaataacacagctctagcacttaatatggatgtatg |
41958567 |
T |
 |
| Q |
116 |
ggaaaaagcccttacct |
132 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
41958568 |
ggaaaaagcccttacct |
41958584 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 35839118 - 35839024
Alignment:
| Q |
115 |
gggaaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactcacagctacggttaagacacattttctctcactc |
209 |
Q |
| |
|
|||||||||| |||| || |||||||||||||||||| | |||||||||| |||||||| ||||| ||| ||| |||||| ||||||||||||| |
|
|
| T |
35839118 |
gggaaaaagctcttagctcgagagcttttcttcctagtcaaactctaaaccacctcaaagtcacaactatggtgcagacacgttttctctcactc |
35839024 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 38000945 - 38000845
Alignment:
| Q |
33 |
attttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtat-gggaaaaagcccttacc |
131 |
Q |
| |
|
||||||||||| | |||||||| |||||||| |||||||||| ||| |||| ||||||| ||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
38000945 |
attttaattatctgtctttttaaaagacaagaattgctaccattatttaataacacagctctagcacttagtatggacgtatggggaaaaaacccttacc |
38000846 |
T |
 |
| Q |
132 |
t |
132 |
Q |
| |
|
| |
|
|
| T |
38000845 |
t |
38000845 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 40687661 - 40687556
Alignment:
| Q |
16 |
ttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatg |
115 |
Q |
| |
|
||||| ||| |||| || ||||||||||||||||||||| |||||||| |||||||| ||| || | ||||| |||||||||||||||||||||||| |
|
|
| T |
40687661 |
ttttatcatgaaaatacgttttaattatttttctttttaaaagacaagaattgctacttctacttactaacaca-acctaacacttagtatggacgtatg |
40687563 |
T |
 |
| Q |
116 |
ggaaaaa |
122 |
Q |
| |
|
||||||| |
|
|
| T |
40687562 |
ggaaaaa |
40687556 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 6308723 - 6308625
Alignment:
| Q |
33 |
attttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatggga-aaaagcccttac |
130 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||||||||||||| |||| |||||| ||||||| ||| || | || ||||||| |||||||||||| |
|
|
| T |
6308723 |
attttaattatttttcttttcaagagacaagaattgctaccactatttaataacacagtcctaacatttaataagaacctatgggaaaaaagcccttac |
6308625 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 27026718 - 27026621
Alignment:
| Q |
36 |
ttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatggg-aaaaagcccttacct |
132 |
Q |
| |
|
|||||| |||||||||| | |||||||| |||| ||||||||| |||| ||||| |||| ||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
27026718 |
ttaattgtttttcttttcaaaagacaagaattgttaccactatttaataacacaatcctagcacttagtaaaaacgtatggggaaaaagcccttacct |
27026621 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 38984711 - 38984770
Alignment:
| Q |
73 |
cactatctaatgacacagccctaacacttagtatggacgtatgggaaaaagcccttacct |
132 |
Q |
| |
|
|||||| |||| ||| ||||||||||| ||||||||| |||||||||||| ||||||||| |
|
|
| T |
38984711 |
cactatttaataacagagccctaacacctagtatggatgtatgggaaaaaacccttacct |
38984770 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 30909859 - 30909802
Alignment:
| Q |
16 |
ttttaccataaaaacacattttaattatttttctttttagaagacaagcattgctacc |
73 |
Q |
| |
|
||||||||| ||| || ||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
30909859 |
ttttaccatgaaattacgttttaattatttttctttttaaaagacaagaattgctacc |
30909802 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 4558182 - 4558222
Alignment:
| Q |
92 |
cctaacacttagtatggacgtatgggaaaaagcccttacct |
132 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4558182 |
cctaatacttagtatagacgtatgggaaaaagcccttacct |
4558222 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0413 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0413
Description:
Target: scaffold0413; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 8875 - 8746
Alignment:
| Q |
98 |
acttagtatggacgtatggg-aaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactcaca--gctacggttaagaca |
194 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||||||| |||||||||||||||||| | |||||||||| | |||||| ||||| ||||| || ||||| |
|
|
| T |
8875 |
acttagtaagaacgtatggggaaaaagcccttacctcgagagcttttcttcctagccaaactctaaaccaactcaaagtcacagcgctactgtgcagaca |
8776 |
T |
 |
| Q |
195 |
cattttctctcactccaagaattatttgac |
224 |
Q |
| |
|
| ||||| || |||||| |||||||||||| |
|
|
| T |
8775 |
cgttttcactaactccaggaattatttgac |
8746 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 10751658 - 10751764
Alignment:
| Q |
115 |
gggaaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactcacagctacggttaagacacattttctctcactccaaga |
214 |
Q |
| |
|
||||||| |||||||||| | |||||| ||||||| | ||| |||||| ||||||||||||||||||| ||| | |||| |||||| |||||||| || |
|
|
| T |
10751658 |
gggaaaaggcccttacctcgtaagctttcattcctagccaaacactaaactacctcaaactcacagctactgttcaaacacgttttctgtcactccagga |
10751757 |
T |
 |
| Q |
215 |
attattt |
221 |
Q |
| |
|
||||||| |
|
|
| T |
10751758 |
attattt |
10751764 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 24158975 - 24158893
Alignment:
| Q |
33 |
attttaattatttttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtatgg |
116 |
Q |
| |
|
||||||||| |||||||||| | || ||||| ||||||||||||| |||| | ||||||||| ||| ||||||||| |||||| |
|
|
| T |
24158975 |
attttaattgtttttcttttca-aatacaagaattgctaccactaattaataagacagccctagcacgtagtatggatgtatgg |
24158893 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 13777332 - 13777393
Alignment:
| Q |
115 |
gggaaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactc |
176 |
Q |
| |
|
||||||||| |||||||| | |||||| |||||||| | |||||||||| ||||||||||| |
|
|
| T |
13777332 |
gggaaaaagtccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc |
13777393 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 243187 - 243292
Alignment:
| Q |
46 |
ttctttttagaagacaagcattgctaccactatctaatgacacagccctaacacttagtatggacgtat-gggaaaaagcccttacctagagagcttttc |
144 |
Q |
| |
|
||||||| | |||||||| |||| |||| |||| |||| ||| ||||||||||||||||| | | |||| ||||||| ||| |||||| || |||||| | |
|
|
| T |
243187 |
ttcttttcaaaagacaagaattgatacccctatttaataacaaagccctaacacttagtaagaatgtatggggaaaacgccattacctcgaaagctttcc |
243286 |
T |
 |
| Q |
145 |
ttccta |
150 |
Q |
| |
|
|||||| |
|
|
| T |
243287 |
ttccta |
243292 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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