View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_78 (Length: 260)
Name: NF20954_high_78
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_78 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 45112465 - 45112713
Alignment:
| Q |
14 |
caaaccaccttgttaccctaaaaaggggacttcctcaaatctaaactttgaatcaaaagcaaatggcacaggattagccaaagaagagaagattattaga |
113 |
Q |
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| T |
45112465 |
caaaccaccttgttaccctaaaaagaggacttcctcaaatctaaactttgaatcaaaagcaaatggcacaggattagccaaagaagagaagattattaga |
45112564 |
T |
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| Q |
114 |
agcaaatctaagactctatttcacacactggcagagaggagaaggagacttgaactagcacataaattcacagagctttcagctataattcctcgctcaa |
213 |
Q |
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| T |
45112565 |
agcaaatctaagactctatttcacacactggcagagaggagaaggagacttgaactagcacataaattcacagagctttcagctataattcctcgctcaa |
45112664 |
T |
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| Q |
214 |
agaaggta--aaactcaacaaattatttagactcaatttttatcccctt |
260 |
Q |
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| T |
45112665 |
agaaggtaataaactcaacaaattatttagactcaatttttatcccctt |
45112713 |
T |
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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 45123014 - 45123090
Alignment:
| Q |
146 |
agagaggagaaggagacttgaactagcacataaattcacagagctttcagctataattcctcgctcaaagaaggtaa |
222 |
Q |
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| T |
45123014 |
agagaggaaaagaagacttgaacttgcacacaagttcatacagctttccactatcattcctcgctcaaataaggtaa |
45123090 |
T |
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