View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_high_8 (Length: 681)

Name: NF20954_high_8
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_high_8
NF20954_high_8
[»] chr3 (3 HSPs)
chr3 (477-668)||(53534854-53535042)
chr3 (477-509)||(53533654-53533686)
chr3 (477-509)||(53536951-53536983)
[»] chr1 (3 HSPs)
chr1 (477-660)||(4753423-4753603)
chr1 (504-668)||(38202442-38202604)
chr1 (477-509)||(4756677-4756709)
[»] chr8 (2 HSPs)
chr8 (477-660)||(42915883-42916063)
chr8 (477-509)||(42919146-42919178)
[»] chr7 (3 HSPs)
chr7 (480-660)||(23252770-23252947)
chr7 (477-668)||(21944680-21944868)
chr7 (477-509)||(23255547-23255579)
[»] chr5 (7 HSPs)
chr5 (477-668)||(19598759-19598947)
chr5 (155-265)||(16052533-16052643)
chr5 (325-478)||(16052321-16052471)
chr5 (20-124)||(16052724-16052830)
chr5 (21-99)||(15936391-15936469)
chr5 (496-599)||(13951464-13951564)
chr5 (432-471)||(42564264-42564303)
[»] chr4 (3 HSPs)
chr4 (481-668)||(13096248-13096431)
chr4 (477-668)||(17382381-17382568)
chr4 (472-533)||(25063602-25063663)
[»] chr2 (1 HSPs)
chr2 (554-668)||(41543723-41543835)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 4e-86; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 477 - 668
Target Start/End: Complemental strand, 53535042 - 53534854
Alignment:
Q  477 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 576  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  53535042 tactccctccgtcccacaatgtaagtcgctttgacacttttacgcatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgtgtt 53534946  T
Q  577 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 668  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  53534945 ttcctcttttacccttggcaacacaattactccaacttaattgccaccatcccacattcctccaactccaaggcaatgaattcatatggttc 53534854  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 509
Target Start/End: Complemental strand, 53533686 - 53533654
Alignment:
Q  477 tactccctccgtcccacaatgtaagtcgctttg 509  Q
    |||||||||||||||||||||||||||||||||    
T  53533686 tactccctccgtcccacaatgtaagtcgctttg 53533654  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 477 - 509
Target Start/End: Complemental strand, 53536983 - 53536951
Alignment:
Q  477 tactccctccgtcccacaatgtaagtcgctttg 509  Q
    ||||||||||||||||||| |||||||||||||    
T  53536983 tactccctccgtcccacaaggtaagtcgctttg 53536951  T

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Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 477 - 660
Target Start/End: Original strand, 4753423 - 4753603
Alignment:
Q  477 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 576  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  4753423 tactccctccgtcccacaatgtaagtcgctttgacacttttacgtatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgtgtt 4753519  T
Q  577 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattca 660  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4753520 ttcctcttttacccttggcaacacaattactccaacttaattgccaccatcccacattcctccaactccaaggcaatgaattca 4753603  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 504 - 668
Target Start/End: Complemental strand, 38202604 - 38202442
Alignment:
Q  504 gctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtttt-cctcttttacctttggcaacacaa 602  Q
    ||||||||| |||||| ||||||||||||||   ||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  38202604 gctttgacacttttacacatattaagaaata---tttaacttttgtgaactttgttaaaattagatatgtttttttcctcttttacccttggcaacacaa 38202508  T
Q  603 ttactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 668  Q
    |||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  38202507 ttactccaacttgattgccaccgtcccaaattcctccaactccaaggcaatgaattcacacggttc 38202442  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 509
Target Start/End: Complemental strand, 4756709 - 4756677
Alignment:
Q  477 tactccctccgtcccacaatgtaagtcgctttg 509  Q
    |||||||||||||||||||||||||||||||||    
T  4756709 tactccctccgtcccacaatgtaagtcgctttg 4756677  T

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Target: chr8 (Bit Score: 150; Significance: 6e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 477 - 660
Target Start/End: Original strand, 42915883 - 42916063
Alignment:
Q  477 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 576  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||    
T  42915883 tactccctccgtcccacaatgtaagtcgctttgacacttttacgcatattaagaaata---tttaacttttatgaactttgttaaaattaaatatgtgtt 42915979  T
Q  577 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattca 660  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  42915980 ttcctcttttacccttggcaacacaattactccaacttaattgccaccgtcccacattcctccaactccaaggcaatgaattca 42916063  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 477 - 509
Target Start/End: Complemental strand, 42919178 - 42919146
Alignment:
Q  477 tactccctccgtcccacaatgtaagtcgctttg 509  Q
    |||||||||||||||||||| ||||||||||||    
T  42919178 tactccctccgtcccacaatataagtcgctttg 42919146  T

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Target: chr7 (Bit Score: 147; Significance: 4e-77; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 480 - 660
Target Start/End: Original strand, 23252770 - 23252947
Alignment:
Q  480 tccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttc 579  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||    
T  23252770 tccctccgtcccacaatgtaagtcgctttgacattttttcgcatattaagaaata---tttaacttttatgaactttgttaaaattaaatatgtgttttc 23252866  T
Q  580 ctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattca 660  Q
    |||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  23252867 ctcttttacccttggcaacacaattactccaacttaattgccaccgtcccacattcctccaactccaaggcaatgaattca 23252947  T

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Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 477 - 668
Target Start/End: Original strand, 21944680 - 21944868
Alignment:
Q  477 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 576  Q
    |||||| ||||| ||| | |||| || |||||| || ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||    
T  21944680 tactccttccgttccaaattgtacgttgctttggcacttttacgcatattaagaaatc---tttaacttttgtgaactttgttaaaattaaatatgtttt 21944776  T
Q  577 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 668  Q
    ||||||||||| | |||||||||||||||||||||||| |||| |||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  21944777 ttcctcttttatccttggcaacacaattactccaacttgattgtcaccgtcccaaattcctccaactccaaggcaatgaattcacacggttc 21944868  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 509
Target Start/End: Complemental strand, 23255579 - 23255547
Alignment:
Q  477 tactccctccgtcccacaatgtaagtcgctttg 509  Q
    |||||||||||||||||||||||||||||||||    
T  23255579 tactccctccgtcccacaatgtaagtcgctttg 23255547  T

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Target: chr5 (Bit Score: 110; Significance: 4e-55; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 477 - 668
Target Start/End: Original strand, 19598759 - 19598947
Alignment:
Q  477 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 576  Q
    |||||||||||||||| | | || | ||||||| || || |||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||    
T  19598759 tactccctccgtcccaaattatatgccgctttggcacttctacgcatattaagaaatc---tttaacttttgtgaactttgttaaaattaaatatgtttt 19598855  T
Q  577 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 668  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||  ||||| ||||||| ||||||||||||||||||||||| |||||    
T  19598856 ttcctcttttacccttggcaacacaattactccaacttgattgccaccgtcccaaattcctcaaactccaaggcaatgaattcacacggttc 19598947  T

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Target: chr5; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 155 - 265
Target Start/End: Complemental strand, 16052643 - 16052533
Alignment:
Q  155 atgaagtatttatcgtgatccttgatgatactcatgctactgatgttttaaaggattttgttgaaggcaacctaattggcatgctttgttaaacaattgg 254  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16052643 atgaagtatttattgtgatccttgatgatactcatgctaatgatgttttaaaggattttgttgaaggcaacctaattggcatgctttgttaaacaattgg 16052544  T
Q  255 ttaggactatc 265  Q
    |||||||||||    
T  16052543 ttaggactatc 16052533  T

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Target: chr5; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 325 - 478
Target Start/End: Complemental strand, 16052471 - 16052321
Alignment:
Q  325 aatgaaagtctatgtgtgatttctccttggtcgtatagaaaaacgcatnnnnnnntgagataagaattaattagagtaaagtttgtagtagtatttcctt 424  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||       || |||||||||||||||||||||| |||||||||   |||||||    
T  16052471 aatgaaagtctatgtgtgatttcaccttggtcgtataggaaaacgcataaaaaaatgtgataagaattaattagagtaaaatttgtagta---tttcctt 16052375  T
Q  425 tttgcctcaattatgcagtaatcacccacttattgcttgtattagcttatacta 478  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16052374 tttgcctcaattatgcagtaatcaaccacttattgcttgtattagcttatacta 16052321  T

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Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 16052830 - 16052724
Alignment:
Q  20 cttggtactactgaatgttgtagtattggtgat--gatgaaaaataaggtttttatattatacggtggatttcttgtcatgtactccctctgatctcgaa 117  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||    
T  16052830 cttggtactactgaatgttgtagtattggtgatatgatgaaaaataaggtttttatattatacggtggatttcttgtcatgtactccctccggtctcaaa 16052731  T
Q  118 tgtaagc 124  Q
    |||||||    
T  16052730 tgtaagc 16052724  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 15936391 - 15936469
Alignment:
Q  21 ttggtactactgaatgttgtagtattggtgatgatgaaaaataaggtttttatattatacggtggatttcttgtcatgt 99  Q
    ||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  15936391 ttggtactagtgaatgttgtagtcttagtgatgatgaaaaataaagtttttatattatactgtgaatttcttgtcatgt 15936469  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 496 - 599
Target Start/End: Original strand, 13951464 - 13951564
Alignment:
Q  496 tgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttcctcttttacctttggc 595  Q
    |||| |||||||||||| ||||||| ||||||||||||    | |||||||||| |||||||| |||| ||||||| | ||| ||||||||||| ||| |    
T  13951464 tgtatgtcgctttgacacttttacgtatattaagaaatc---tctaacttttgtaaactttgtcaaaagtaaatatatttttccctcttttacccttgac 13951560  T
Q  596 aaca 599  Q
    ||||    
T  13951561 aaca 13951564  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 42564303 - 42564264
Alignment:
Q  432 caattatgcagtaatcacccacttattgcttgtattagct 471  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  42564303 caattatgcagtaatcaccaatttattgcttgtattagct 42564264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 481 - 668
Target Start/End: Complemental strand, 13096431 - 13096248
Alignment:
Q  481 ccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttcc 580  Q
    |||||||||||| | |||| |||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||    
T  13096431 ccctccgtcccaaattgtatgtcgctttgacacttttacgcatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgttttttcc 13096335  T
Q  581 tcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 668  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||  | ||| ||||||||||||| |||| | |||||||||| |||||    
T  13096334 tcttttacccttggcaacacaattaccccaacttgattgccaccgt-ccaaattcctccaactctaaggaattgaattcacacggttc 13096248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 477 - 668
Target Start/End: Complemental strand, 17382568 - 17382381
Alignment:
Q  477 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 576  Q
    |||||||||||| ||| | |||| ||||||||| || |||||| |||||||||||||    ||||||||||||||||||||||||||||| |||||| ||    
T  17382568 tactccctccgttccaaattgtacgtcgctttggcacttttacacatattaagaaatc---tttaacttttgtgaactttgttaaaattagatatgt-tt 17382473  T
Q  577 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 668  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  17382472 ttcctcttttacccttggcaacacaattattccaacttgattgccaccgtcccaaattcctccaactccaaggcaatgaattcacacggttc 17382381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 533
Target Start/End: Original strand, 25063602 - 25063663
Alignment:
Q  472 tatactactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaat 533  Q
    ||||||||||||||||||||| | |||||| || |||| || ||| || |||||||||||||    
T  25063602 tatactactccctccgtcccaaattgtaagacgttttggcaatttcacacatattaagaaat 25063663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 554 - 668
Target Start/End: Original strand, 41543723 - 41543835
Alignment:
Q  554 tttgttaaaattaaatatgtgttttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaat 653  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||  ||||| ||||||||||||||||||||||    
T  41543723 tttgtgaaaattaaatatgt-ttttcctcttttacccttggcaacacaattactccaacttgattg-caccgtcccaaattcctccaactccaaggcaat 41543820  T
Q  654 gaattcacatggttc 668  Q
    ||||||||| |||||    
T  41543821 gaattcacacggttc 41543835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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