View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_88 (Length: 249)
Name: NF20954_high_88
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_88 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 14200569 - 14200466
Alignment:
| Q |
121 |
cacgtcaactcatgcatacaaagaaatccatacaacatgtcaagtgtcaacccacaattacaaagaactcatacatgtccagttcaaatgcattgagcga |
220 |
Q |
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| T |
14200569 |
cacgtcaactcatgcatacaaagaaatccatacaacatgtcaa-------cccacacttacaaagaactcatacatgtccagttcaaatgcattgagcga |
14200477 |
T |
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| Q |
221 |
agccgtaaaac |
231 |
Q |
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|| |||||||| |
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| T |
14200476 |
agtcgtaaaac |
14200466 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 14201213 - 14201171
Alignment:
| Q |
121 |
cacgtcaactcatgcatacaaagaaatccatacaacatgtcaa |
163 |
Q |
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||||| ||||||||| ||||||||| ||||||||||||||||| |
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| T |
14201213 |
cacgtaaactcatgcgtacaaagaactccatacaacatgtcaa |
14201171 |
T |
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