View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20954_high_9 (Length: 669)
Name: NF20954_high_9
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_9 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 559; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 18 - 659
Target Start/End: Original strand, 40059540 - 40060190
Alignment:
| Q |
18 |
agtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgatgagagga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
40059540 |
agtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgatgggagga |
40059639 |
T |
|
| Q |
118 |
aggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40059640 |
aggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaag |
40059739 |
T |
|
| Q |
218 |
tttggttggtaatttatgtgtgatatttttctggggtgttcatctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40059740 |
tttggttggtaatttatgtgtgatatttttctggggtgttcatctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattc |
40059839 |
T |
|
| Q |
318 |
ccgggattaagttccgaactgataatgaaccatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgcca |
417 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40059840 |
cggggattaagttccgaactgataatgaaccatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgcca |
40059939 |
T |
|
| Q |
418 |
agaaattttgtcttcaggccgaaatgaagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40059940 |
agaaattttgtcttcaggccgaaatgaagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataat |
40060039 |
T |
|
| Q |
518 |
tttatctcaggnnnnnnnatcactaaatacaagtattgcgagtatatttttgtaga-----------taaagtttatatttgttaatgtgagagtatttg |
606 |
Q |
| |
|
||||||||||| |||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
40060040 |
tttatctcaggtttttttatcactaaatacaattatagcgagtatatttttgtagacatattaaggtcaaagttaatatttgttaatgtgagagtatttg |
40060139 |
T |
|
| Q |
607 |
tgctttctattgccagattgaaaatgagtatggagacatcgattcagcctatg |
659 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40060140 |
tgc--tctattgccagattgaaaatgagtatggagacatcgattcagcctatg |
40060190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 48 - 528
Target Start/End: Original strand, 40077652 - 40078129
Alignment:
| Q |
48 |
taaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtgg |
147 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
40077652 |
taaggttagaaagactattataattcattgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtaaaggcagtgg |
40077751 |
T |
|
| Q |
148 |
ctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatattttt |
247 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||| ||||||| |
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|
| T |
40077752 |
ctgaggcaggactatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaactacgggtaaagtttggtcc----tttctgtgtattattttt |
40077847 |
T |
|
| Q |
248 |
ctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatga |
345 |
Q |
| |
|
||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
40077848 |
ctgtggtgttcatgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatga |
40077947 |
T |
|
| Q |
346 |
accatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatgaa |
445 |
Q |
| |
|
|||||||||||||| | ||||| | || |||||||||| | | |||||||||||||||||||||||||| || |||| |||||||||||||||||||||| |
|
|
| T |
40077948 |
accatttaaggtag-gctaaccttcaccctgttgcttcatgcatttgtccttaaatctgagttcacttgacaggaaactttgtcttcaggccgaaatgaa |
40078046 |
T |
|
| Q |
446 |
gagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg |
528 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40078047 |
gcgattcaccgctaagattgtcgatctcatgaagcaagagaaactgtatgcatcacaaggaggacctataattttatctcagg |
40078129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 20 - 659
Target Start/End: Original strand, 40085429 - 40086078
Alignment:
| Q |
20 |
tttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgatgagaggaag |
119 |
Q |
| |
|
|||||||||| ||| | |||||||||| |||| | |||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40085429 |
tttatccaaatatgatcttgatctactataagctaagaaagtctatcttaattcattgaaatgaaatggatttttgcagtatgattttgatgggaggaag |
40085528 |
T |
|
| Q |
120 |
gatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtt |
219 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||| || ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40085529 |
gatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccggattggtccatatgtttgttctgaatggaactatgggtaaagt- |
40085627 |
T |
|
| Q |
220 |
tggttggtaatttatgtgtgatatttttctggggtgttca--tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattc |
317 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40085628 |
---ttggtaatttatgtgtattatatttcgagggtgttcatgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattc |
40085724 |
T |
|
| Q |
318 |
ccgggattaagttccgaactgataatgaaccatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgcca |
417 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||| || ||||| | | || |||||| | ||||||||||| | ||||||||||||| || |
|
|
| T |
40085725 |
cagggattaagttccgaactgacaatgaaccatttaaggta-agttaaccttcagtccagtgcttcatgcttttgtccttgga-ctgagttcacttgaca |
40085822 |
T |
|
| Q |
418 |
agaaattttgtcttcaggccgaaatgaagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataat |
517 |
Q |
| |
|
|||| |||||||||||| ||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40085823 |
ggaaactttgtcttcaggttgaaatgaagcgattcaccactaagattgtcgacctcatgaagcaagagaaactgtatgcatcacaaggaggacctataat |
40085922 |
T |
|
| Q |
518 |
tttatctcaggnnnnnnnatcacta-----aatacaagtattgcgagtatatttttgtagat---------aaagtttatatttgttaatgtgagagtat |
603 |
Q |
| |
|
||||||||||| |||| | ||||||||||| | | |||||| ||| |||| ||||||||||||||||||||||||||| | |
|
|
| T |
40085923 |
tttatctcaggtttttttatcatgaaatacaatacaagtatagttaatatattcttgaagatattaaggtcaaagtttatatttgttaatgtgagagtgt |
40086022 |
T |
|
| Q |
604 |
ttgtgctttctattgccagattgaaaatgagtatggagacatcgattcagcctatg |
659 |
Q |
| |
|
||||| |||||| || ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40086023 |
ttgtgatttctaatgacagatagaaaatgagtatggagacatcgattcagcctatg |
40086078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 582 - 645
Target Start/End: Original strand, 40078205 - 40078268
Alignment:
| Q |
582 |
atatttgttaatgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagacat |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
40078205 |
atatttgttaatgtgagagtatttgtgctttctaatgccagattgaaaatgagtatggaaacat |
40078268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 260 - 367
Target Start/End: Complemental strand, 35052758 - 35052652
Alignment:
| Q |
260 |
tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag |
359 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||| ||| || |||||||||||||||||| |
|
|
| T |
35052758 |
tctaattgagggctttaacttcttaacagtggttaacctctttggattcacttcattccagggattaggttccaaacagacaatgaaccatttaaggta- |
35052660 |
T |
|
| Q |
360 |
aggtaacc |
367 |
Q |
| |
|
|||||||| |
|
|
| T |
35052659 |
aggtaacc |
35052652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 241 - 358
Target Start/End: Complemental strand, 12735579 - 12735460
Alignment:
| Q |
241 |
tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg |
338 |
Q |
| |
|
|||||| ||||||| ||||| ||||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||| || | |
|
|
| T |
12735579 |
tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag |
12735480 |
T |
|
| Q |
339 |
ataatgaaccatttaaggta |
358 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
12735479 |
acaatgaaccatttaaggta |
12735460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 241 - 358
Target Start/End: Complemental strand, 12798406 - 12798287
Alignment:
| Q |
241 |
tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg |
338 |
Q |
| |
|
|||||| ||||||| ||||| ||||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||| || | |
|
|
| T |
12798406 |
tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag |
12798307 |
T |
|
| Q |
339 |
ataatgaaccatttaaggta |
358 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
12798306 |
acaatgaaccatttaaggta |
12798287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 453 - 528
Target Start/End: Complemental strand, 22015654 - 22015579
Alignment:
| Q |
453 |
accgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg |
528 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22015654 |
accgctaagattgtcgatatgatgaagcaagagaacctctatgcatcacaaggaggacctataattttatctcagg |
22015579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 22015910 - 22015825
Alignment:
| Q |
131 |
atttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaa |
216 |
Q |
| |
|
||||||||||||||| || | || || |||||||||||||||| |||||||||||||| |||||||||||||| || ||||||| |
|
|
| T |
22015910 |
atttgtgaaggcagtagcagcagcaggtttatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaattacgggtaaa |
22015825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 361
Target Start/End: Complemental strand, 22015744 - 22015667
Alignment:
| Q |
284 |
aacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagag |
361 |
Q |
| |
|
|||||||||||||| |||||| | || || ||| | || ||||||||||||||| ||||||||||||| |||| |||| |
|
|
| T |
22015744 |
aacagtggtttccccctttggttgcattttattgctggaattaagttccgaactaataatgaaccattcaaggcagag |
22015667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 241 - 367
Target Start/End: Original strand, 53322735 - 53322862
Alignment:
| Q |
241 |
tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg |
338 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||||||||||| | ||||| |||||||| ||||||||||||| ||||||||||||| || | |
|
|
| T |
53322735 |
tatttttctggggtcttcatttctaattgagggctttaacttcttaagattggttaacctctttgtattcacttcattccagggattaagttccaaatcg |
53322834 |
T |
|
| Q |
339 |
ataatgaaccatttaaggtagaggtaacc |
367 |
Q |
| |
|
| |||||||||||||||||| |||||||| |
|
|
| T |
53322835 |
acaatgaaccatttaaggta-aggtaacc |
53322862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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