View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_93 (Length: 243)
Name: NF20954_high_93
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_93 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40753604 - 40753832
Alignment:
| Q |
1 |
ccgaataagctaatatggattgtccatgtttgatacaaggctatcttatttgacacataagtgtttctccaatacagttgtccggatatggtttagacgg |
100 |
Q |
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| T |
40753604 |
ccgaataagctaatatggattgtccatgtttgatccaaggctatcttatttaactcataagtgtttccccaagacagttgtccggatatggtttagacgg |
40753703 |
T |
|
| Q |
101 |
gtttaaaatcctcactataaagattattgaagtacacacttttctactt--aaaaaacatcttttcagatacacaattttctactaaaaaacctcattta |
198 |
Q |
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||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40753704 |
gttaaaaaccctcactataaagattattgaagtacacacttttctacttaaaaaaaacatcttttcagatacacaattttctactaaaaaacctcattta |
40753803 |
T |
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| Q |
199 |
ttattttgatacaaaaatgaggatagaag |
227 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40753804 |
ttattttgatacaaaaatgaggatagaag |
40753832 |
T |
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