View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_high_95 (Length: 242)

Name: NF20954_high_95
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_high_95
NF20954_high_95
[»] chr4 (8 HSPs)
chr4 (7-120)||(2133746-2133859)
chr4 (46-124)||(21122422-21122500)
chr4 (48-123)||(35519269-35519344)
chr4 (80-122)||(10727564-10727606)
chr4 (80-122)||(10941333-10941375)
chr4 (48-123)||(5190629-5190704)
chr4 (50-124)||(20817993-20818067)
chr4 (74-123)||(56555984-56556033)
[»] chr7 (14 HSPs)
chr7 (47-124)||(5800445-5800522)
chr7 (36-123)||(1787153-1787239)
chr7 (77-124)||(48109826-48109873)
chr7 (45-122)||(20055834-20055909)
chr7 (49-106)||(7806997-7807054)
chr7 (48-124)||(15566578-15566654)
chr7 (49-120)||(16682977-16683048)
chr7 (49-120)||(17657213-17657284)
chr7 (81-124)||(23896859-23896902)
chr7 (45-124)||(48621958-48622037)
chr7 (85-123)||(21028346-21028384)
chr7 (47-124)||(27513149-27513226)
chr7 (47-123)||(27509840-27509915)
chr7 (90-122)||(43066934-43066966)
[»] chr3 (13 HSPs)
chr3 (48-123)||(38176950-38177025)
chr3 (48-118)||(45701719-45701789)
chr3 (46-123)||(22130489-22130566)
chr3 (77-122)||(40360526-40360571)
chr3 (47-124)||(22177563-22177640)
chr3 (80-121)||(35380063-35380104)
chr3 (42-123)||(54768140-54768221)
chr3 (47-124)||(17438549-17438628)
chr3 (90-124)||(20838526-20838560)
chr3 (46-123)||(18956608-18956685)
chr3 (88-124)||(285677-285713)
chr3 (79-123)||(22526527-22526571)
chr3 (48-124)||(47783966-47784041)
[»] chr8 (12 HSPs)
chr8 (47-124)||(23085626-23085703)
chr8 (47-124)||(41666542-41666619)
chr8 (36-98)||(1525671-1525733)
chr8 (78-123)||(3727295-3727340)
chr8 (47-124)||(5918834-5918911)
chr8 (36-121)||(13469363-13469450)
chr8 (79-124)||(3825395-3825440)
chr8 (51-124)||(39429913-39429986)
chr8 (46-86)||(11929400-11929440)
chr8 (90-122)||(12838771-12838803)
chr8 (48-124)||(13150143-13150219)
chr8 (77-121)||(32856439-32856483)
[»] chr5 (10 HSPs)
chr5 (47-124)||(31659584-31659661)
chr5 (48-118)||(36700953-36701023)
chr5 (48-124)||(14000665-14000741)
chr5 (46-118)||(19930465-19930537)
chr5 (78-124)||(19929640-19929686)
chr5 (90-123)||(1094020-1094053)
chr5 (48-117)||(32870119-32870188)
chr5 (77-121)||(834026-834070)
chr5 (77-124)||(2530439-2530487)
chr5 (90-122)||(16312686-16312718)
[»] chr1 (5 HSPs)
chr1 (48-124)||(37705632-37705708)
chr1 (47-118)||(1580998-1581069)
chr1 (78-124)||(11842802-11842848)
chr1 (48-121)||(33194093-33194166)
chr1 (48-117)||(44648438-44648507)
[»] chr6 (2 HSPs)
chr6 (48-122)||(12169672-12169746)
chr6 (48-123)||(19145962-19146037)
[»] chr2 (10 HSPs)
chr2 (48-98)||(20111234-20111284)
chr2 (43-118)||(13594052-13594127)
chr2 (45-124)||(34753400-34753479)
chr2 (90-124)||(40482964-40482998)
chr2 (81-123)||(45271170-45271212)
chr2 (78-123)||(3357184-3357229)
chr2 (48-121)||(11653158-11653231)
chr2 (48-121)||(13450352-13450425)
chr2 (48-121)||(33134331-33134404)
chr2 (43-123)||(37869208-37869288)
[»] scaffold0293 (1 HSPs)
scaffold0293 (48-121)||(4682-4755)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 2133859 - 2133746
Alignment:
Q  7 aaatatcaatgtttttcttcgtatcacactctttattatttactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatg 106  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || |  ||||||||| |||||||||||||||||||    
T  2133859 aaatatcaatgtttttctccgtatcacactctttattatttattagcgaaaagacagacactcatgtgtccgtctttccgctatttttattgtgttaatg 2133760  T
Q  107 tttgaaaattatga 120  Q
    ||| ||||||||||    
T  2133759 tttaaaaattatga 2133746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 21122500 - 21122422
Alignment:
Q  46 ttactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||||||| ||||||||||| |||| |||||||||| | ||||||||  || || |||||||||||||||||||    
T  21122500 ttactagcgaaaaaacagacactcatgtatctgtctttccgctctttttattacgtcaacgtttgaaaattatgaacgg 21122422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 35519344 - 35519269
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    |||||||||||||| | ||||||| | |  ||||||||| | ||||||||||||||| ||||||||||||||||||    
T  35519344 actagcgaaaagacgggcactcacatgtccgtctttccgctctttttattgtgttaacgtttgaaaattatgaacg 35519269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 10727606 - 10727564
Alignment:
Q  80 ctttccgttatttttattgtgttaatgtttgaaaattatgaac 122  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  10727606 ctttccgttctttttattatgttaatgtttgaaaattatgaac 10727564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 10941375 - 10941333
Alignment:
Q  80 ctttccgttatttttattgtgttaatgtttgaaaattatgaac 122  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  10941375 ctttccgttctttttattatgttaatgtttgaaaattatgaac 10941333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 5190704 - 5190629
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    |||||||||||||| | ||||||| | | |||||||||| | ||||||||| | |||  |||||||||||||||||    
T  5190704 actagcgaaaagacgggcactcacctgtctgtctttccgctctttttattgcgctaacatttgaaaattatgaacg 5190629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 20817993 - 20818067
Alignment:
Q  50 tagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    |||||||||||| | |||||||||   |||||||||||| |||||||||  ||||| | |||||| |||||||||    
T  20817993 tagcgaaaagactggcactcacgtgcttgtctttccgttctttttattgcattaatttatgaaaaatatgaacgg 20818067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 56555984 - 56556033
Alignment:
Q  74 atatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    ||||||||| |||||||||||||| ||| || ||||||||| ||||||||    
T  56555984 atatgtcttcccgttatttttattatgtaaacgtttgaaaagtatgaacg 56556033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 5800522 - 5800445
Alignment:
Q  47 tactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||||||||| ||||||||||| |  ||||||||| | ||||||||| | |||||||||||||||||||||||    
T  5800522 tactagcgaaaagacggacactcacgtgtccgtctttccgctctttttattgcgctaatgtttgaaaattatgaacgg 5800445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 1787239 - 1787153
Alignment:
Q  36 tctttattatttactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    ||||||||||| | |||||||||||| ||||||||||| |  ||||||||| | |||| |||| ||||| ||||||||||||||||||    
T  1787239 tctttattatt-attagcgaaaagacggacactcacgtgtccgtctttccgctcttttaattgcgttaacgtttgaaaattatgaacg 1787153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 48109873 - 48109826
Alignment:
Q  77 tgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||| || | |||||||||||||||||||||||||||||||||||    
T  48109873 tgtcttttcgctgtttttattgtgttaatgtttgaaaattatgaacgg 48109826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 20055909 - 20055834
Alignment:
Q  45 tttactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaac 122  Q
    ||||||||||||||  ||| ||||||||| |  |||||| |||| ||||||||| |||||| ||||||||||||||||    
T  20055909 tttactagcgaaaa--caggcactcacgtgtccgtctttgcgttctttttattgcgttaatatttgaaaattatgaac 20055834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 7807054 - 7806997
Alignment:
Q  49 ctagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatg 106  Q
    ||||||||||||| ||||||||||||| |||||||| | | |||| ||||||||||||    
T  7807054 ctagcgaaaagacggacactcacgtatctgtctttctgctcttttcattgtgttaatg 7806997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 15566578 - 15566654
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    |||||||||||| | | |||||||||   |||||||||| |  ||||||| |||||| |||||||||||||||||||    
T  15566578 actagcgaaaagtcgggcactcacgtgcctgtctttccgctcattttattatgttaaagtttgaaaattatgaacgg 15566654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 16682977 - 16683048
Alignment:
Q  49 ctagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatga 120  Q
    ||||||||||||| |  ||||||||   |||||||| ||| ||||||| | |||||||||||||||||||||    
T  16682977 ctagcgaaaagacgggtactcacgtgcctgtctttctgttctttttatcgcgttaatgtttgaaaattatga 16683048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 17657213 - 17657284
Alignment:
Q  49 ctagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatga 120  Q
    ||||||||||||| |  ||||||||   |||||||| ||| ||||||| | |||||||||||||||||||||    
T  17657213 ctagcgaaaagacgggtactcacgtgcctgtctttctgttctttttatcgcgttaatgtttgaaaattatga 17657284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 23896902 - 23896859
Alignment:
Q  81 tttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    |||||| | ||||||||||| |||||||||||||||||||||||    
T  23896902 tttccgctctttttattgtgataatgtttgaaaattatgaacgg 23896859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 48621958 - 48622037
Alignment:
Q  45 tttactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||||||||||||| || |||||| | |||||||||  | |||||||| || ||| |||| |||||||| |||||    
T  48621958 tttactagcgaaaagacaggcattcacgtgtctgtctttcctctctttttattatgctaacgtttaaaaattattaacgg 48622037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 21028346 - 21028384
Alignment:
Q  85 cgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  21028346 cgttatttttattgtgttaaagtttgaaaattataaacg 21028384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 27513149 - 27513226
Alignment:
Q  47 tactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||||||||| | ||||||||| |  |||||||   ||||||||||| | ||| ||||||||||||| |||||    
T  27513149 tactagcgaaaagacgggcactcacgtgtccgtctttcttctatttttattgcgctaaagtttgaaaattattaacgg 27513226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 27509915 - 27509840
Alignment:
Q  47 tactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    |||||||||||||||||||||||| || |  ||||||||  |||| ||||||||  || ||||||||||||| ||||    
T  27509915 tactagcgaaaagacagacactcatgt-tccgtctttccactattcttattgtgcaaacgtttgaaaattataaacg 27509840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 43066966 - 43066934
Alignment:
Q  90 tttttattgtgttaatgtttgaaaattatgaac 122  Q
    |||||||||||||||||||||||||||| ||||    
T  43066966 tttttattgtgttaatgtttgaaaattacgaac 43066934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 38176950 - 38177025
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    |||||||||||||||| ||||||||| | |||||||||| ||||||||||| | ||| |||| |||||||||||||    
T  38176950 actagcgaaaagacaggcactcacgtgtctgtctttccgctatttttattgcgataacgtttcaaaattatgaacg 38177025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 45701719 - 45701789
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattat 118  Q
    |||||||||||||| |||||||||||   |||||||||||| ||||||||| | |||||||||||||||||    
T  45701719 actagcgaaaagacggacactcacgtgcttgtctttccgttctttttattgcgctaatgtttgaaaattat 45701789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 22130489 - 22130566
Alignment:
Q  46 ttactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    ||||||| |||||||| ||||||||| | |  ||||||||||||||||||||| | |||| |||||||||||||||||    
T  22130489 ttactagggaaaagactgacactcacatgtccgtctttccgttatttttattgcgctaatatttgaaaattatgaacg 22130566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 40360571 - 40360526
Alignment:
Q  77 tgtctttccgttatttttattgtgttaatgtttgaaaattatgaac 122  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  40360571 tgtctttccgctctttttattgtgttaatgtttgaaaattatgaac 40360526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 22177640 - 22177563
Alignment:
Q  47 tactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    |||||| |||||||| | | ||||||| | | |||||||| | ||||||||| ||||| |||||||||||||||||||    
T  22177640 tactagtgaaaagacgggcgctcacgtgtctctctttccgctctttttattgcgttaacgtttgaaaattatgaacgg 22177563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 35380104 - 35380063
Alignment:
Q  80 ctttccgttatttttattgtgttaatgtttgaaaattatgaa 121  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    
T  35380104 ctttccgttctttttattgtgctaatgtttgaaaattatgaa 35380063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 54768221 - 54768140
Alignment:
Q  42 ttatttactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    |||| ||||||||||||||  | ||||||||| | ||||||| || | |||||||||  |||| ||||||||||||||||||    
T  54768221 ttatatactagcgaaaagatgggcactcacgtgtctgtcttttcgctctttttattgcattaacgtttgaaaattatgaacg 54768140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 17438549 - 17438628
Alignment:
Q  47 tactagcgaaaagacagacactcacgtata--tgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||||||||||  ||||||||| ||  ||||||| || | ||||| ||| | |||||||||||||||||||||||    
T  17438549 tactagcgaaaagacacgcactcacgtgtacctgtcttttcgctctttttgttgcgctaatgtttgaaaattatgaacgg 17438628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 20838560 - 20838526
Alignment:
Q  90 tttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||||||||| |||||||||||||||||||    
T  20838560 tttttattgtgttaaagtttgaaaattatgaacgg 20838526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 18956685 - 18956608
Alignment:
Q  46 ttactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    |||||||||||||||| ||||| ||| | |  |||||||| |||||||||||| | |||| ||| |||| ||||||||    
T  18956685 ttactagcgaaaagactgacacacacatgtccgtctttccattatttttattgcgctaatatttaaaaactatgaacg 18956608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 285677 - 285713
Alignment:
Q  88 tatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  285677 tatttttattgcgttaacgtttgaaaattatgaacgg 285713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 22526571 - 22526527
Alignment:
Q  79 tctttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    |||||| ||| ||||||||| ||||| ||||||||||||||||||    
T  22526571 tctttctgttttttttattgcgttaacgtttgaaaattatgaacg 22526527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 47783966 - 47784041
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    |||||||||||||||| |||| | ||  | ||||||| ||| |||||||||| | |||||||||||||||| |||||    
T  47783966 actagcgaaaagacaggcactgatgtgcacgtctttctgtt-tttttattgtatcaatgtttgaaaattataaacgg 47784041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 23085703 - 23085626
Alignment:
Q  47 tactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||||||||| | ||||||| ||   ||||||||||| ||||||||| |||| |||| |||||||||||||||    
T  23085703 tactagcgaaaagacgggcactcacatacccgtctttccgttctttttattgcgttattgttagaaaattatgaacgg 23085626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 41666542 - 41666619
Alignment:
Q  47 tactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||||||||||| ||||||||| |  ||||||| | | |||||||||  |||||||||||| |||||||||||    
T  41666542 tactagcgaaaagacagtcactcacgtgtccgtctttctgctctttttattgccttaatgtttgaatattatgaacgg 41666619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 1525671 - 1525733
Alignment:
Q  36 tctttattatttactagcgaaaagacagacactcacgtatatgtctttccgttatttttattg 98  Q
    ||||||| |||||||||||||||||| ||||||||  |   ||||||||||||||||||||||    
T  1525671 tctttatgatttactagcgaaaagacggacactcaattgcctgtctttccgttatttttattg 1525733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 3727340 - 3727295
Alignment:
Q  78 gtctttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||||    
T  3727340 gtctttccactatttttattgtgctaatgtttgaaaattatgaacg 3727295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 5918911 - 5918834
Alignment:
Q  47 tactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||||||||| |||||||||||    ||||||||| | ||||||||| | ||| ||||||||||||| |||||    
T  5918911 tactagcgaaaagacggacactcacgtgctcgtctttccgctctttttattgcgctaacgtttgaaaattattaacgg 5918834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 13469450 - 13469363
Alignment:
Q  36 tctttattattta--ctagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaa 121  Q
    |||||||||||||  || |||||||||| | |||||||||    ||||||||| | |||||||| |||||| ||||||||||||||||    
T  13469450 tctttattatttaaacttgcgaaaagacgggcactcacgtgcccgtctttccgctctttttattatgttaaagtttgaaaattatgaa 13469363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 3825440 - 3825395
Alignment:
Q  79 tctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    |||||||||| ||||||||| ||||| |||| ||||||||||||||    
T  3825440 tctttccgttctttttattgcgttaacgtttaaaaattatgaacgg 3825395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 39429986 - 39429913
Alignment:
Q  51 agcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||||| || |||||||| |  ||||||||||| ||||||||| |  || ||||||||||||| |||||    
T  39429986 agcgaaaagacggatactcacgtgtccgtctttccgttttttttattgcgccaacgtttgaaaattataaacgg 39429913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 11929400 - 11929440
Alignment:
Q  46 ttactagcgaaaagacagacactcacgtatatgtctttccg 86  Q
    |||||||||||||||| | ||||||||| ||||||||||||    
T  11929400 ttactagcgaaaagacgggcactcacgtgtatgtctttccg 11929440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 12838803 - 12838771
Alignment:
Q  90 tttttattgtgttaatgtttgaaaattatgaac 122  Q
    ||||||||| |||||||||||||||||||||||    
T  12838803 tttttattgcgttaatgtttgaaaattatgaac 12838771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 13150219 - 13150143
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||| |||||||  || |||||||| |  ||||||||| | ||||||||| ||||| ||||||||||||| |||||    
T  13150219 actagtgaaaagatggatactcacgtgtccgtctttccgctctttttattgcgttaacgtttgaaaattattaacgg 13150143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 32856439 - 32856483
Alignment:
Q  77 tgtctttccgttatttttattgtgttaatgtttgaaaattatgaa 121  Q
    |||||||||||| ||||||||  | ||||||||||||||||||||    
T  32856439 tgtctttccgttctttttatttcgctaatgtttgaaaattatgaa 32856483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 31659661 - 31659584
Alignment:
Q  47 tactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||||||||| | ||||||||| |  ||||||||||| ||||||||| | ||| ||||||||| |||||||||    
T  31659661 tactagcgaaaagacgggcactcacgtgttcgtctttccgttctttttattgcgctaacgtttgaaaaatatgaacgg 31659584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 36701023 - 36700953
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattat 118  Q
    |||||||||||||| ||||||||||| | ||||||||||   ||||||||| | |||||||| ||||||||    
T  36701023 actagcgaaaagacggacactcacgtgtctgtctttccgccctttttattgcgctaatgtttaaaaattat 36700953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 14000741 - 14000665
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    |||||||||||| | ||| |||||||    ||||||||| | ||||||||| ||||| |||||||||||||||||||    
T  14000741 actagcgaaaaggcggactctcacgtgctcgtctttccgctctttttattgcgttaacgtttgaaaattatgaacgg 14000665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 19930537 - 19930465
Alignment:
Q  46 ttactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattat 118  Q
    |||||||| ||||||| ||||||||||| |   |||||||| | |||||||| |||||| |||||||||||||    
T  19930537 ttactagcaaaaagacggacactcacgtgtccatctttccgctctttttattatgttaacgtttgaaaattat 19930465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 19929686 - 19929640
Alignment:
Q  78 gtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||| |  |||||||||||||| |||||||||||||||||||    
T  19929686 gtctttccgctcattttattgtgttaacgtttgaaaattatgaacgg 19929640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 1094053 - 1094020
Alignment:
Q  90 tttttattgtgttaatgtttgaaaattatgaacg 123  Q
    ||||||||| ||||||||||||||||||||||||    
T  1094053 tttttattgcgttaatgtttgaaaattatgaacg 1094020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 32870188 - 32870119
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaatta 117  Q
    ||||||||||||||  ||| ||| || | |||||||||| | |||||||||| |||| ||||||||||||    
T  32870188 actagcgaaaagacgaacattcatgtgtctgtctttccgctctttttattgtattaacgtttgaaaatta 32870119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 834026 - 834070
Alignment:
Q  77 tgtctttccgttatttttattgtgttaatgtttgaaaattatgaa 121  Q
    |||||||||| | ||||||||| ||||| ||||||||||||||||    
T  834026 tgtctttccgctctttttattgcgttaacgtttgaaaattatgaa 834070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 2530487 - 2530439
Alignment:
Q  77 tgtctttccg-ttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    |||||||||| || ||||||||| |||||||||||| ||||||||||||    
T  2530487 tgtctttccgcttttttttattgcgttaatgtttgagaattatgaacgg 2530439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 16312718 - 16312686
Alignment:
Q  90 tttttattgtgttaatgtttgaaaattatgaac 122  Q
    ||||||||||| |||||||||||||||||||||    
T  16312718 tttttattgtggtaatgtttgaaaattatgaac 16312686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 37705632 - 37705708
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    |||||||||||||| | ||||||| ||| |||||||| | | ||||||||| | ||| |||||||||||||||||||    
T  37705632 actagcgaaaagacgggcactcacatatctgtctttctgctctttttattgcgctaacgtttgaaaattatgaacgg 37705708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 1580998 - 1581069
Alignment:
Q  47 tactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattat 118  Q
    ||||||||||||||| |||||||| || |  ||||||||| | ||||||||| | ||| |||||||||||||    
T  1580998 tactagcgaaaagacggacactcaggtgtccgtctttccgctctttttattgcgctaaagtttgaaaattat 1581069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 11842802 - 11842848
Alignment:
Q  78 gtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||| | ||||||||| ||||| |||||||||||||||||||    
T  11842802 gtctttccgctctttttattgcgttaacgtttgaaaattatgaacgg 11842848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 33194166 - 33194093
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaa 121  Q
    ||||||||||| |||| ||||||||| |   |||||||| | ||||||||| ||||| |||| |||||||||||    
T  33194166 actagcgaaaatacaggcactcacgtgtccttctttccgctctttttattgcgttaacgtttaaaaattatgaa 33194093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 44648507 - 44648438
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaatta 117  Q
    ||||||||||||| || ||||||| | |  ||||||||| | ||||||||||| ||| ||||||||||||    
T  44648507 actagcgaaaagataggcactcacatgtccgtctttccgctctttttattgtgctaacgtttgaaaatta 44648438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 12169672 - 12169746
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaac 122  Q
    |||||||||||||||  ||||| |||    ||||||||| | ||||||||| |||||||||||||||||||||||    
T  12169672 actagcgaaaagacaagcactctcgtgcccgtctttccgctctttttattgcgttaatgtttgaaaattatgaac 12169746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 19145962 - 19146037
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    ||||||||||| || | |||| |||| |  ||||||||| | |||||||||  |||||||||||||||||||||||    
T  19145962 actagcgaaaacacgggcacttacgtgtccgtctttccgctctttttattgaattaatgtttgaaaattatgaacg 19146037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 20111284 - 20111234
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattg 98  Q
    ||||||||||||||||||||||||||||  ||||||||| | |||||||||    
T  20111284 actagcgaaaagacagacactcacgtatccgtctttccgctctttttattg 20111234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 13594052 - 13594127
Alignment:
Q  43 tatttactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattat 118  Q
    ||||||||| ||||||||  |||||| ||||| | ||||||||| | ||||||||| | ||| |||||||||||||    
T  13594052 tatttactaacgaaaagatggacacttacgtacacgtctttccgctctttttattgcgctaacgtttgaaaattat 13594127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 34753479 - 34753400
Alignment:
Q  45 tttactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||||||||||| | |||||||||    ||||||| | | ||||||||  | |||||||||||||||||||||||    
T  34753479 tttactagcgaaaagacgggcactcacgtgcccgtctttctgctctttttattacgctaatgtttgaaaattatgaacgg 34753400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 40482998 - 40482964
Alignment:
Q  90 tttttattgtgttaatgtttgaaaattatgaacgg 124  Q
    ||||||||||||||| |||||||||||||||||||    
T  40482998 tttttattgtgttaacgtttgaaaattatgaacgg 40482964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 45271170 - 45271212
Alignment:
Q  81 tttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    |||||||| |||||||||||||||||| || ||||||||||||    
T  45271170 tttccgttttttttattgtgttaatgtgtgtaaattatgaacg 45271212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 3357184 - 3357229
Alignment:
Q  78 gtctttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    ||||||| ||| |||||||| |||||| ||||||||||||||||||    
T  3357184 gtctttctgttctttttattatgttaaagtttgaaaattatgaacg 3357229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 11653231 - 11653158
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaa 121  Q
    |||| ||||||||  | ||||||||| | |||||||| | | ||||||||| ||||| ||||||||||||||||    
T  11653231 actaacgaaaagatgggcactcacgtgtctgtctttctgctttttttattgcgttaacgtttgaaaattatgaa 11653158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 13450425 - 13450352
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaa 121  Q
    |||||||||||||| |  ||||||||    ||||||||| | ||||||||| | ||||||||||||||||||||    
T  13450425 actagcgaaaagacgggtactcacgtgcccgtctttccgctctttttattgcgctaatgtttgaaaattatgaa 13450352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 33134331 - 33134404
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaa 121  Q
    |||||||||||||| || |||||| | |  ||||||||  | ||||||||| | ||||||||||||||||||||    
T  33134331 actagcgaaaagacggatactcacatgtccgtctttccactctttttattgcgctaatgtttgaaaattatgaa 33134404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 37869288 - 37869208
Alignment:
Q  43 tatttactagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaacg 123  Q
    ||||||||||||||||||| ||||||||| | |  |||| |||  | ||| ||||||||| | |||| |||||||||||||    
T  37869288 tatttactagcgaaaagacggacactcacatgttcgtctctcctctctttgtattgtgtttaagtttaaaaattatgaacg 37869208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 4755 - 4682
Alignment:
Q  48 actagcgaaaagacagacactcacgtatatgtctttccgttatttttattgtgttaatgtttgaaaattatgaa 121  Q
    ||||||| |||||||| ||||||||| |  ||||||||| | ||||||||  | |||||||| |||||||||||    
T  4755 actagcgcaaagacaggcactcacgtgtccgtctttccgctctttttattacgataatgtttcaaaattatgaa 4682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University