View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_high_99 (Length: 239)
Name: NF20954_high_99
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_high_99 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 703625 - 703818
Alignment:
| Q |
11 |
cacagatattcatccctttatttcaaaccaaacaaatcttaacccatagttgatttatacccaacaacatatatgctta-tatacaaatctctgacaaac |
109 |
Q |
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| T |
703625 |
cacaaatattcatccctttatttcaaaccaaacaaatcttaacccatagttgatttatacccaaca---tatatgctttgtatacaaatctctgacaaac |
703721 |
T |
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| Q |
110 |
ttccaaatgcaaaatccttcttctctcttctacggttagtgttagtgccacagagaataacaacaaattgcactcaccctcactcaaggtaatcctt |
206 |
Q |
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| T |
703722 |
ttccaaatgcaaaatccttcttctctcttctacggttagtgttagtgccacagagaataacaacaaattgccctcacccccactcaaggtaatcctt |
703818 |
T |
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