View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_100 (Length: 243)
Name: NF20954_low_100
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_100 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 40060167 - 40060409
Alignment:
| Q |
1 |
atggagacatcgattcagcctatggttctgctggtaaatcatacatcaattgggcagcaaaaatggctacatctcttgatacaggtgtaccttgggtcat |
100 |
Q |
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| T |
40060167 |
atggagacatcgattcagcctatggttctgctggtaaatcatacatcaattgggcagcaaaaatggctacatctcttgatacaggtgtaccttgggtcat |
40060266 |
T |
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| Q |
101 |
gtgtcagcaagaagatgctcctaatccaatcgtaggttttatgttttgatatgtctacgctaattgttttttggtttactaggttgcctgtcttctggaa |
200 |
Q |
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| T |
40060267 |
gtgtcagcaagaagatgctcctgattcaatcgtaggttttatgttttgatatgtctacgctaattgttttctggtttactaggttgcctgtcttctggaa |
40060366 |
T |
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| Q |
201 |
aagagaaatcttagtatgttgtctgcattcatctcactcgact |
243 |
Q |
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| T |
40060367 |
aagagaaatcttagtatgttgtctgcattcatcttacttgact |
40060409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 40086055 - 40086300
Alignment:
| Q |
1 |
atggagacatcgattcagcctatggttctgctggtaaatcatacatcaattgggcagcaaaaatggctacatctcttgatacaggtgtaccttgggtcat |
100 |
Q |
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| T |
40086055 |
atggagacatcgattcagcctatggttctgctggtaaatcatacatcaattgggcagcaaaaatggctacatctcttgatacaggtgtaccttgggtcat |
40086154 |
T |
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| Q |
101 |
gtgtcagcaagaagatgctcctaatccaatcgtaggttttatgttttgatatgtctacgctaattgttttt-------tggtttactaggttgcctgtct |
193 |
Q |
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| T |
40086155 |
gtgtcagcaagcagatgctcctgatccaattgtaagttttatgttttgatatgtcaatgttaattgttttttagtttatggtttactaggttgcctgtct |
40086254 |
T |
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| Q |
194 |
tctggaaaagagaaatcttagtatgttgtctgcattcatctcactc |
239 |
Q |
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| T |
40086255 |
tccggaaaagagcaatcttggtatgccgtttgcattcatcttactc |
40086300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 40078278 - 40078411
Alignment:
| Q |
20 |
ctatggttctgctggtaaatcatacatcaattgggcagcaaaaatggctacatctcttgatacaggtgtaccttgggtcatgtgtcagcaagaagatgct |
119 |
Q |
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| T |
40078278 |
ctatggttctgctggtaaatcatacatcaactgggctgcaaaaatggctacatctcttgatacaggtgttccttgggtcatgtgtcagcaaggagatgct |
40078377 |
T |
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| Q |
120 |
cctaatccaatcgtaggttttatgttttgatatg |
153 |
Q |
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| T |
40078378 |
cctgatccaatcgtaagttttatgttttaatatg |
40078411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 22015415 - 22015335
Alignment:
| Q |
29 |
tgctggtaaatcatacatcaattgggcagcaaaaatggctacatctcttgatacaggtgtaccttgggtcatgtgtcagca |
109 |
Q |
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| T |
22015415 |
tgctgctaaatcctacatcgattgggcagcatcaatggctacatctcttgatacaggtgttccctggattatgtgccagca |
22015335 |
T |
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