View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20954_low_103 (Length: 239)
Name: NF20954_low_103
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_103 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 32107357 - 32107138
Alignment:
| Q |
1 |
ccactttcttttcctatatgtccccaccttacataataatacaagtatcacttcaacatcttcatacatttttataacactttgacattccacatacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32107357 |
ccactttcttttcctatatgtccccaccttacataataatacaagtatcacttcaacatcttcatatatttttataacactttgacattccacatacaaa |
32107258 |
T |
|
| Q |
101 |
ccaaacctctctctcttcaaatctctccctcttcctgttcctagatccatttgcttaatctctcagattctttcaggtaactaaactctttttctcttat |
200 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32107257 |
ccaaacctc--tctcctcaaatctctccctcttcctgttcctagatcca-ttgcttaatctctcagcttctttcaggtaactaaactctttttctcttat |
32107161 |
T |
|
| Q |
201 |
tgcaaatcacttatattttttct |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32107160 |
tgcaaatcacttatattttttct |
32107138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University