View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_104 (Length: 239)
Name: NF20954_low_104
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_104 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4191765 - 4191545
Alignment:
| Q |
1 |
ctcttgagtgtccccaacataaattcgatcacggtaggtttgaatagagacaattgtgttggggaatagcttattctcatacttccttaataaccgtctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191765 |
ctcttgagtgtccccaacataaattcgatcacggtaggtttgaatagagacaattgtgttggggaatagcttattctcatacttccttaataaccgtctt |
4191666 |
T |
|
| Q |
101 |
tttcccaaatcataaaacctgagaacaggtcctattcctgcaagtaatcttccctgaaactgactaagagcaagaggaacaccttcaacctgagttttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191665 |
tttcccaaatcataaaacctgagaacaggtcctattcctgcaagtaatcttccctgaaactgactaagagcaagaggaacaccttcaacctgagttttgt |
4191566 |
T |
|
| Q |
201 |
gaagtagttcaagagaccttc |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4191565 |
gaagtagttcaagagaccttc |
4191545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 52211324 - 52211104
Alignment:
| Q |
1 |
ctcttgagtgtccccaacataaattcgatcacggtaggtttgaatagagacaattgtgttggggaatagcttattctcatacttccttaataaccgtctt |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52211324 |
ctcttgaatgtccccaacataaattcgatcacggtaggtttgaatagagacaattgtgttggggaatagcttattctcacacttccttaataaccgtctt |
52211225 |
T |
|
| Q |
101 |
tttcccaaatcataaaacctgagaacaggtcctattcctgcaagtaatcttccctgaaactgactaagagcaagaggaacaccttcaacctgagttttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52211224 |
tttcccaaatcataaaacctgagaacaggtcctattcctgcaagtaatcttccctgaaactgactaagagcaagaggaacaccttcaacctgagttttgt |
52211125 |
T |
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| Q |
201 |
gaagtagttcaagagaccttc |
221 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
52211124 |
gaagtagttcaagagaacttc |
52211104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 47858083 - 47857879
Alignment:
| Q |
17 |
acataaattcgatcacggtaggtttgaatagagacaattgtgttggggaatagcttattctcatacttccttaataaccgtctttttcccaaatcataaa |
116 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| | |||| ||| |||||||||| | || |||||||| |||||||||||||||||||| | |
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| T |
47858083 |
acataaattcgatcacggtaggcatgaatagagacaatcgaaatgggaaatgacttattctcacattttcttaataatcgtctttttcccaaatcatata |
47857984 |
T |
|
| Q |
117 |
acctgagaacaggtcctattcctgcaagtaatcttccctgaaactgactaagagcaagaggaacaccttcaacctgagttttgtgaagtagttcaagaga |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
47857983 |
gcctgagcacaggtcctattcctgcaagtaatcttccttgaaactgacatagagcaagaggaacaccctcaacctgagttttgtgaagaagttcaagaga |
47857884 |
T |
|
| Q |
217 |
ccttc |
221 |
Q |
| |
|
||||| |
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|
| T |
47857883 |
ccttc |
47857879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 47716000 - 47716204
Alignment:
| Q |
17 |
acataaattcgatcacggtaggtttgaatagagacaattgtgttggggaatagcttattctcatacttccttaataaccgtctttttcccaaatcataaa |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| | | |||||||| |||||||||| | || |||||||| |||||||||||||||||||| | |
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| T |
47716000 |
acataaattcgatcacggtaggcatgaatagagacaatggagctggggaatgacttattctcacattttcttaataatcgtctttttcccaaatcatata |
47716099 |
T |
|
| Q |
117 |
acctgagaacaggtcctattcctgcaagtaatcttccctgaaactgactaagagcaagaggaacaccttcaacctgagttttgtgaagtagttcaagaga |
216 |
Q |
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|||||| |||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||||| |
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| T |
47716100 |
gcctgagtacaggtccaattcctgcaagtaatcttccttgaaactgacatagagcgagaggaacaccctcaacctgagttttgtggagaagttcaagaga |
47716199 |
T |
|
| Q |
217 |
ccttc |
221 |
Q |
| |
|
||||| |
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|
| T |
47716200 |
ccttc |
47716204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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