View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20954_low_109 (Length: 236)
Name: NF20954_low_109
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_109 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 45846597 - 45846385
Alignment:
| Q |
1 |
atttcacaaacatgtcgacctcgttgcctacatcaaacaaacgcctcaaagccgaagtgaaaattgaagaagaagacgacaatgataatgacaataacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45846597 |
atttcacaaacatgtcgacctcgttgcctacatcaaacaaacgcctcaaagccgaagtgaaaattgaagaagaagacgacaatga------caataacaa |
45846504 |
T |
|
| Q |
101 |
taaccaagatgtttgctgcggaatttgctacatcgaacgcggaatttcagtccctgcacaaattgattgctgcagccattatttttgcttcgtttgcatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45846503 |
taaccaagatgtttgctgcggaatttgctacatcgaacgcggaatttcagtccctgcacaaattgattgctgcagccattatttttgcttcgtttgcatc |
45846404 |
T |
|
| Q |
201 |
atggaatgggccaaacatg |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
45846403 |
atggaatgggccaaacatg |
45846385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University