View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_11 (Length: 575)
Name: NF20954_low_11
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 12 - 560
Target Start/End: Original strand, 49385472 - 49386020
Alignment:
| Q |
12 |
catcatcataagtcataacataaccattcttaccttctgcagcctcattattcaatccatattttctttgccattttctcagccatgtcaacctctaaaa |
111 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49385472 |
catcatcacaagtcataacataaccattcttaccttctgcagcctcattattcaatccatattttctttgccattttctcagccatgtcaacctctaaaa |
49385571 |
T |
|
| Q |
112 |
agatcacatcagattcatctttcaaaggatatcatgaaacaaatcaaacacaaatgtgtctgtctctacttcaaagaaacacaaacacatcacctagtgg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49385572 |
agatcacatcagattcatctttcaaaggatatcatgaaacaaatcaaacacaaatgtgtctgtctctacttcaaagaaacacaaacacatcacctagtgg |
49385671 |
T |
|
| Q |
212 |
tgaaaaaagaggaagaaggaaacaatcagaaccaggaaggtttcttggtgttaggagaagaccttggggtagatatgctgctgaaattagagaccctaca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49385672 |
tgaaaaaagaggaagaaggaaacaatcagaaccaggaaggtttcttggtgttaggagaagaccttggggtagatatgctgctgaaattagagaccctaca |
49385771 |
T |
|
| Q |
312 |
actaaagaaagacattggcttggtacttttgatactgctcaagaagctgctcttgcttatgatagagctgctatttccatgaaaggaaatcaagctagaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49385772 |
actaaagaaagacattggcttggtacttttgatactgctcaagaagctgctcttgcttatgatagagctgctatttccatgaaaggaaatcaagctagaa |
49385871 |
T |
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| Q |
412 |
ctaatttcatttactctgatactatcaattttcacacacttgtttcttctcctatggatcttcaaactctcttaccagcttcacagttactcactaacac |
511 |
Q |
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| T |
49385872 |
ctaatttcatttactctgatactatcaattttcacacacttgtttcttctcctatggatcttcaaactctcttaccagcttcacagttactcactaacac |
49385971 |
T |
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| Q |
512 |
tcaaaccaatcaaaatactactctttctcaccttaacactgcacacact |
560 |
Q |
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| T |
49385972 |
tcaaaccaatcaaaatactactctttctcaccttaacactgcacacact |
49386020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 208 - 397
Target Start/End: Complemental strand, 6507830 - 6507641
Alignment:
| Q |
208 |
gtggtgaaaaaagaggaagaaggaaacaatcagaaccaggaaggtttcttggtgttaggagaagaccttggggtagatatgctgctgaaattagagaccc |
307 |
Q |
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| T |
6507830 |
gtggcgaaaaaagaggcagaaaaaagcaagcagaaccaggtaagtttcttggtgtaaggagaagaccttggggtagatatgctgctgaaattagagatcc |
6507731 |
T |
|
| Q |
308 |
tacaactaaagaaagacattggcttggtacttttgatactgctcaagaagctgctcttgcttatgatagagctgctatttccatgaaagg |
397 |
Q |
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| T |
6507730 |
tgcaactaaagaaagacattggttaggaacatttgatactgctcaagaagctgcttttgcttatgatagagctgctctttccatcaaagg |
6507641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 4420202 - 4420145
Alignment:
| Q |
326 |
ttggcttggtacttttgatactgctcaagaagctgctcttgcttatgatagagctgct |
383 |
Q |
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| T |
4420202 |
ttggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgct |
4420145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 25986002 - 25986059
Alignment:
| Q |
326 |
ttggcttggtacttttgatactgctcaagaagctgctcttgcttatgatagagctgct |
383 |
Q |
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|||||||||||||||||| |||||| ||||||||||| | |||||||||||||||||| |
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| T |
25986002 |
ttggcttggtacttttgacactgctgaagaagctgctttggcttatgatagagctgct |
25986059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 40001351 - 40001303
Alignment:
| Q |
63 |
tcaatccatattttctttgccattttctcagccatgtcaacctctaaaa |
111 |
Q |
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| T |
40001351 |
tcaatccatattttctttgccattttcttagccatgtcaacttctaaaa |
40001303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 361
Target Start/End: Complemental strand, 43848378 - 43848271
Alignment:
| Q |
254 |
tcttggtgttaggagaagaccttggggtagatatgctgctgaaattagagaccctacaactaaagaaagacattggcttggtacttttgatactgctcaa |
353 |
Q |
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|||||||||||| | |||||| ||||| |||||||| ||||||||||| ||||| || ||||| ||||||||| | || || ||||| ||||| || |
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| T |
43848378 |
tcttggtgttagaaaaagaccatggggaagatatgcagctgaaattaggaacccttataccaaagagagacattggttaggcacatttgacactgcagaa |
43848279 |
T |
|
| Q |
354 |
gaagctgc |
361 |
Q |
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|||||||| |
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| T |
43848278 |
gaagctgc |
43848271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 33469977 - 33470033
Alignment:
| Q |
327 |
tggcttggtacttttgatactgctcaagaagctgctcttgcttatgatagagctgct |
383 |
Q |
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||||||||||||||||| || ||| ||||||| ||| | |||||||||| ||||||| |
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| T |
33469977 |
tggcttggtacttttgacacagctgaagaagcagctttggcttatgataaagctgct |
33470033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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