View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_low_115 (Length: 226)

Name: NF20954_low_115
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_low_115
NF20954_low_115
[»] chr8 (4 HSPs)
chr8 (18-206)||(25892737-25892925)
chr8 (18-215)||(25818312-25818518)
chr8 (96-150)||(2308641-2308695)
chr8 (96-150)||(2313835-2313889)
[»] chr6 (2 HSPs)
chr6 (50-150)||(34763583-34763683)
chr6 (93-150)||(20602891-20602948)
[»] chr1 (3 HSPs)
chr1 (50-150)||(29457516-29457616)
chr1 (96-184)||(24645876-24645964)
chr1 (63-148)||(8320235-8320320)
[»] scaffold1235 (1 HSPs)
scaffold1235 (63-148)||(2070-2155)
[»] chr5 (1 HSPs)
chr5 (63-148)||(29736595-29736680)
[»] chr4 (1 HSPs)
chr4 (63-148)||(28402581-28402666)
[»] chr3 (1 HSPs)
chr3 (63-148)||(493588-493673)
[»] chr2 (3 HSPs)
chr2 (63-148)||(22994646-22994731)
chr2 (69-148)||(29218558-29218637)
chr2 (69-148)||(29331857-29331936)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 25892737 - 25892925
Alignment:
Q  18 gtaggaacataagctattgtgattttatcaagttgatctcttacataatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25892737 gtaggaacataagctattgtgattttatcaagttgatctcttacataatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccggattggatg 25892836  T
Q  118 caagtgccttagcacttaagttatcacaccacatgattagttttcttggtaatggcagtttgagttcatttagaagtgatctgacccat 206  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25892837 caagtgccttagcacttaagttatcacaccacatgattggttttcttggtaatggcagtttgagttcatttagaagtgatctgacccat 25892925  T

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Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 25818518 - 25818312
Alignment:
Q  18 gtaggaacataagctattgtgattttatcaagt------tgatctcttacataatgaacatcaatttcaatgtgt---ttgaaacgagcatgcataacca 108  Q
    |||||||||||||||||||||||||||||  ||      ||||||||||||||||| ||||||||||||||||||   ||| |||||||||||||||||     
T  25818518 gtaggaacataagctattgtgattttatcttgtagcacttgatctcttacataatgcacatcaatttcaatgtgtaatttggaacgagcatgcataaccg 25818419  T
Q  109 gattggatgcaagtgccttagcacttaagttatcacaccacatgattagttttcttggtaatggcagtttgagttcatttagaagtgatctgacccattt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  25818418 gattggatgcaagtgccttagcacttaagttatcacaccacaaaattggttttcttggtaatggcagtttgagtttatttagaagtgatctgacccatgt 25818319  T
Q  209 catctca 215  Q
     ||||||    
T  25818318 tatctca 25818312  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 2308695 - 2308641
Alignment:
Q  96 gcatgcataaccagattggatgcaagtgccttagcacttaagttatcacaccaca 150  Q
    |||||||||||| ||||||| || |||||||||||||| ||||||||||||||||    
T  2308695 gcatgcataaccggattggaagctagtgccttagcactcaagttatcacaccaca 2308641  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 2313889 - 2313835
Alignment:
Q  96 gcatgcataaccagattggatgcaagtgccttagcacttaagttatcacaccaca 150  Q
    |||||||||||| ||||||| || |||||||||||||| ||||||||||||||||    
T  2313889 gcatgcataaccggattggaagctagtgccttagcactcaagttatcacaccaca 2313835  T

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Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 34763583 - 34763683
Alignment:
Q  50 ttgatctcttacataatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcacaccac 149  Q
    |||||||||||   | |||||||| ||||||||||||||| | | |||||||||||   |||| |||||||||||||||||||| |||||||||||||||    
T  34763583 ttgatctcttatgaagtgaacatctatttcaatgtgtttggacctagcatgcataataggatttgatgcaagtgccttagcactcaagttatcacaccac 34763682  T
Q  150 a 150  Q
    |    
T  34763683 a 34763683  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 20602948 - 20602891
Alignment:
Q  93 cgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcacaccaca 150  Q
    |||||||||||||| || || ||||| |||||||| ||||| | ||||||||||||||    
T  20602948 cgagcatgcataactaggttcgatgctagtgccttggcactcaggttatcacaccaca 20602891  T

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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 29457516 - 29457616
Alignment:
Q  50 ttgatctcttacataatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcacaccac 149  Q
    |||||||||||   | |||||||| ||||||||||||||| | | |||||||||||   |||| |||||||||||||||||||| |||||||||||||||    
T  29457516 ttgatctcttatgaagtgaacatctatttcaatgtgtttggacctagcatgcataataggatttgatgcaagtgccttagcactcaagttatcacaccac 29457615  T
Q  150 a 150  Q
    |    
T  29457616 a 29457616  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 24645876 - 24645964
Alignment:
Q  96 gcatgcataaccagattggatgcaagtgccttagcacttaagttatcacaccacatgattagttttcttggtaatggcagtttgagttc 184  Q
    |||||||||||| ||||||| || |||||||||||||| ||||||||||||||||  | | | |||||| ||| |||||||||||||||    
T  24645876 gcatgcataaccggattggaagctagtgccttagcactcaagttatcacaccacaaaactggctttctttgtattggcagtttgagttc 24645964  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 8320235 - 8320320
Alignment:
Q  63 taatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcacacca 148  Q
    |||||||||||||||||||| || ||  ||||||||||||  ||  |||| || || |||||||| ||||| ||||||||||||||    
T  8320235 taatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactcaagttatcacacca 8320320  T

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Target: scaffold1235 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1235
Description:

Target: scaffold1235; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 2155 - 2070
Alignment:
Q  63 taatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcacacca 148  Q
    |||||||||||||||||||| || ||  ||||||||||||  ||  |||| || || |||||||| ||||| ||||||||||||||    
T  2155 taatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactcaagttatcacacca 2070  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 29736595 - 29736680
Alignment:
Q  63 taatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcacacca 148  Q
    |||||||||||||||||||| || ||  ||||||||||||  ||  |||| || || |||||||| ||||| ||||||||||||||    
T  29736595 taatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactcaagttatcacacca 29736680  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 28402666 - 28402581
Alignment:
Q  63 taatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcacacca 148  Q
    |||||||||||||||||||| || ||  ||||||||||||  ||  |||| || || |||||||| ||||| ||||||||||||||    
T  28402666 taatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactcaagttatcacacca 28402581  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 493673 - 493588
Alignment:
Q  63 taatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcacacca 148  Q
    |||||||||||||||||||| || ||  ||||||||||||  ||  |||| || || |||||||| ||||| ||||||||||||||    
T  493673 taatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactcaagttatcacacca 493588  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 22994731 - 22994646
Alignment:
Q  63 taatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcacacca 148  Q
    |||||||||||||||||||| || ||  ||||||||||||  ||  |||| || || |||||||| ||||| ||||||||||||||    
T  22994731 taatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactcaagttatcacacca 22994646  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 29218558 - 29218637
Alignment:
Q  69 acatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcacacca 148  Q
    |||||||||||||| || ||  | ||||||||||| ||  |||| || || |||||||| ||||||||||||||||||||    
T  29218558 acatcaatttcaatatgctttgatcgagcatgcatgactggatttgaagctagtgccttggcacttaagttatcacacca 29218637  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 29331857 - 29331936
Alignment:
Q  69 acatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcacacca 148  Q
    |||||||||||||| || ||  | ||||||||||| ||  |||| || || |||||||| ||||||||||||||||||||    
T  29331857 acatcaatttcaatatgctttgatcgagcatgcatgactggatttgaagctagtgccttggcacttaagttatcacacca 29331936  T

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