View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_117 (Length: 224)
Name: NF20954_low_117
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_117 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 27 - 209
Target Start/End: Complemental strand, 41967471 - 41967292
Alignment:
| Q |
27 |
gcttgggtctttgttttggtcaaaactttgagccttttttgaaccatcgagtcaaacaatgtatatgatcatttacattcttggacccaagactatttgg |
126 |
Q |
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| T |
41967471 |
gcttgggtctttgttttggtcaaaactttgagccttttttgaaccatcgagtcaaacaatgtatatgatcatttacattcttggacccaagactatttgg |
41967372 |
T |
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| Q |
127 |
attagtaacctttaattatggaaggaaaacattgatttttaaagtgattaattactactatccaagagggaaactaaatatgt |
209 |
Q |
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| T |
41967371 |
attagtaacctttaattatggaaggaaaacattgatttttaaagtgattaatt---actatccaagagggaaactaaatatgt |
41967292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 1234359 - 1234214
Alignment:
| Q |
29 |
ttgggtctttgttttggtcaaaactttgagccttttttgaaccatcgagtcaaacaatgtatatgatcatttacattcttggacccaagactatttggat |
128 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1234359 |
ttgggtctttgttttggtcaaaactttgaaccttttttgaaccatcgagtgaaacaatgtatatgatcatttacattcttggacctaagactatttggat |
1234260 |
T |
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| Q |
129 |
tagtaacctttaattatggaaggaaaacattgatttttaaagtgatt |
175 |
Q |
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|| ||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
1234259 |
tattaacctttaattatggatggaaaacattga-ttttaaagtgatt |
1234214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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