View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_low_119 (Length: 221)

Name: NF20954_low_119
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_low_119
NF20954_low_119
[»] chr4 (2 HSPs)
chr4 (17-207)||(18421443-18421634)
chr4 (165-207)||(34441700-34441742)
[»] chr5 (1 HSPs)
chr5 (17-144)||(15934479-15934607)
[»] chr8 (1 HSPs)
chr8 (150-206)||(18885603-18885659)
[»] chr7 (3 HSPs)
chr7 (36-88)||(7007479-7007532)
chr7 (36-88)||(7022837-7022890)
chr7 (36-88)||(7053350-7053403)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 18421634 - 18421443
Alignment:
Q  17 cagagattaacaacagtaaaccaatgtaacattacaatttatggaagggaaaaattctaaa-gtaagatagagcttagcacaagaataagaagaagaagg 115  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  18421634 cagagattaacaccagtaaaccaatgtaacattacaatgtatggaagggaaaaattctaaaagtaagatagagcttagcacaagactaagaagaagaagg 18421535  T
Q  116 aatcattctcaagaatgccaagggaggaatagagaggttcatcaaattcttcacccctttgccaatcctttcatttgcctcttatagcatgt 207  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18421534 aatcattctgaagaatgccaagggaggaatagagaggttcatcaaattcttcacccctttgccaatcctttcatttgcctcttatagcatgt 18421443  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 34441700 - 34441742
Alignment:
Q  165 ttcacccctttgccaatcctttcatttgcctcttatagcatgt 207  Q
    ||||||| |||||||||| ||| ||||||||||||||||||||    
T  34441700 ttcacccttttgccaatcatttgatttgcctcttatagcatgt 34441742  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 15934479 - 15934607
Alignment:
Q  17 cagagattaacaacagtaaaccaatgtaacattacaatttatggaagggaaaaattctaaa-gtaagatagagcttagcacaagaataagaagaagaagg 115  Q
    |||||||||||| || ||||||||||| ||||||||||||||||||||||||  | ||||| ||||||||||||||||||| ||| ||||||||||||||    
T  15934479 cagagattaacaccaataaaccaatgtgacattacaatttatggaagggaaag-tactaaaagtaagatagagcttagcactagactaagaagaagaagg 15934577  T
Q  116 aatcattctcaagaatgcc-aagggaggaa 144  Q
    ||||||||  ||||||||| ||||||||||    
T  15934578 aatcattcagaagaatgccaaagggaggaa 15934607  T

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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 18885603 - 18885659
Alignment:
Q  150 aggttcatcaaattcttcacccctttgccaatcctttcatttgcctcttatagcatg 206  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  18885603 aggttcatcaaattcttcacccctttgccaatcatttgatttgcctcttatagcatg 18885659  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 7007479 - 7007532
Alignment:
Q  36 accaatgtaacattacaatttatggaagggaaaaattct-aaagtaagatagag 88  Q
    |||||||||| | || |||||||||||||||||||| || ||||||||||||||    
T  7007479 accaatgtaatagtagaatttatggaagggaaaaatactgaaagtaagatagag 7007532  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 7022837 - 7022890
Alignment:
Q  36 accaatgtaacattacaatttatggaagggaaaaattct-aaagtaagatagag 88  Q
    |||||||||| | || |||||||||||||||||||| || ||||||||||||||    
T  7022837 accaatgtaatagtagaatttatggaagggaaaaatactgaaagtaagatagag 7022890  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 7053350 - 7053403
Alignment:
Q  36 accaatgtaacattacaatttatggaagggaaaaattct-aaagtaagatagag 88  Q
    |||||||||| | || |||||||||||||||||||| || ||||||||||||||    
T  7053350 accaatgtaatagtagaatttatggaagggaaaaatactgaaagtaagatagag 7053403  T

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