View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_low_12 (Length: 563)

Name: NF20954_low_12
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_low_12
NF20954_low_12
[»] chr8 (5 HSPs)
chr8 (18-545)||(35841567-35842092)
chr8 (49-103)||(33220024-33220077)
chr8 (48-77)||(23559033-23559062)
chr8 (50-94)||(9384617-9384661)
chr8 (49-81)||(9418810-9418842)
[»] chr4 (2 HSPs)
chr4 (207-376)||(2220712-2220881)
chr4 (49-121)||(45246987-45247059)
[»] chr7 (3 HSPs)
chr7 (441-544)||(30024103-30024206)
chr7 (159-207)||(30024513-30024561)
chr7 (46-95)||(5060845-5060894)
[»] chr3 (1 HSPs)
chr3 (46-95)||(44833467-44833516)
[»] chr6 (1 HSPs)
chr6 (47-95)||(23608425-23608473)
[»] chr1 (2 HSPs)
chr1 (49-95)||(11821160-11821206)
chr1 (47-103)||(45688306-45688362)
[»] chr2 (1 HSPs)
chr2 (50-103)||(12969288-12969340)


Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 545
Target Start/End: Complemental strand, 35842092 - 35841567
Alignment:
Q  18 ggaaagcaca-ctctggctctaatctgactaagaattctgctcattatccaaatggttccgttcagttccaaaataaaaattcaaaacgtctctacctat 116  Q
    |||||||||| ||| ||||||||||| ||||    ||||| | ||||||||||| ||||||  ||||||||||||||||||| ||||  |  |||| ||     
T  35842092 ggaaagcacaactccggctctaatctaacta----ttctgattattatccaaatagttccgagcagttccaaaataaaaatttaaaatattcctacgtag 35841997  T
Q  117 gttaattcacgatcataaactcaatgtgacttaactcacgctctatcattcctatgtaaaattgaattaaaattgtcaaactctcaaattagttttgatc 216  Q
    ||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35841996 gttaactcacgatcataaactca---tgacttaactcacgctctatcattcctatgtaaaattgaattaaaattgtcaaactctcaaattagttttgatc 35841900  T
Q  217 tattcctggtattgagacgccaagtgcttcaaatgctgcaattctttattcttattatcataatcagcaagacgttcatgccggatcctaaatccgtttt 316  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35841899 tattcctggtattgagacgccaagtgtttcaaatgctgcaattcttgattcttattatcataatcagcaagacgttcatgccggatcctaaatccgtttt 35841800  T
Q  317 taaaagaatttttctccataatcgacacttcgatttgctccttcagcatcaaattttcctcctgaagtgcatatgtagcctgagtccttgccgacataaa 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35841799 taaaagaatttttctccataatcgacacttcgatttgctccttcagcatcaaattttcctcctgaagtgcatatgtagcctgag-ccttgccgacataaa 35841701  T
Q  417 tgttttgggattactgtgatgcatacacatgtaatttaatttcataattcagcaagcgtttgttgccagcacatctatttgaatagttggcaccgttttc 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  35841700 tgttttgggattactgtgatgcatacacatgtaatttaatttcataattcagcaagctattgttgccagcacatctatttgaatagttggcaccgttttc 35841601  T
Q  517 ct-----atggcataggtgtagcacatgtataac 545  Q
    ||     |||||||||||||||||||||||||||    
T  35841600 ctatggcatggcataggtgtagcacatgtataac 35841567  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 33220024 - 33220077
Alignment:
Q  49 gaattctgctcattatccaaatggttccgttcagttccaaaataaaaattcaaaa 103  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||  |||||||    
T  33220024 gaattctgctcattatccaaatggttccgctca-ttccaaagtaaatgttcaaaa 33220077  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 23559062 - 23559033
Alignment:
Q  48 agaattctgctcattatccaaatggttccg 77  Q
    ||||||||||||||||||||||||||||||    
T  23559062 agaattctgctcattatccaaatggttccg 23559033  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 9384617 - 9384661
Alignment:
Q  50 aattctgctcattatccaaatggttccgttcagttccaaaataaa 94  Q
    ||||||||||||||| |||||||||||| ||| || |||||||||    
T  9384617 aattctgctcattattcaaatggttccgctcattttcaaaataaa 9384661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 9418842 - 9418810
Alignment:
Q  49 gaattctgctcattatccaaatggttccgttca 81  Q
    |||||||| ||||||||||||||||||||||||    
T  9418842 gaattctgttcattatccaaatggttccgttca 9418810  T

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Target: chr4 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 207 - 376
Target Start/End: Original strand, 2220712 - 2220881
Alignment:
Q  207 agttttgatctattcctggtattgagacgccaagtgcttcaaatgctgcaattctttattcttattatcataatcagcaagacgttcatgccggatccta 306  Q
    |||| ||||||  |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||| || ||| ||||||||    
T  2220712 agttctgatctgctcctggtattgagacgccaactgcttcaaatgctgcaattcttgattcttattatcataatcagaaagacgctcgtgctggatccta 2220811  T
Q  307 aatccgtttttaaaagaatttttctccataatcgacacttcgatttgctccttcagcatcaaattttcct 376  Q
    ||| ||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||    
T  2220812 aatgcgtttttaaaagaatttttctccttaatcagcacttcgatttgctccttcagcatcaaattttcct 2220881  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 45247059 - 45246987
Alignment:
Q  49 gaattctgctcattatccaaatggttccgttcagttccaaaataaaaattcaaaacgtctctacctatgttaa 121  Q
    ||||| |||||||||| |||||||||||||||| ||| ||| ||||   |||||| ||| |||| ||||||||    
T  45247059 gaattatgctcattattcaaatggttccgttcatttctaaagtaaatgatcaaaatgtccctacgtatgttaa 45246987  T

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Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 441 - 544
Target Start/End: Complemental strand, 30024206 - 30024103
Alignment:
Q  441 acacatgtaatttaatttcataattcagcaagcgtttgttgccagcacatctatttgaatagttggcaccgttttcctatggcataggtgtagcacatgt 540  Q
    ||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||| |||||||||||| ||||||||||| |||||||||||||    
T  30024206 acacatgtaatataatttcataattcagcaagctattgttgccagcacatctgtttgaatatttggcaccgtttccctatggcataagtgtagcacatgt 30024107  T
Q  541 ataa 544  Q
    ||||    
T  30024106 ataa 30024103  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 30024561 - 30024513
Alignment:
Q  159 ctatcattcctatgtaaaattgaattaaaattgtcaaactctcaaatta 207  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  30024561 ctatcattcctatgtaaaagtcaattaaaattgtcaaactctcaaatta 30024513  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 5060845 - 5060894
Alignment:
Q  46 taagaattctgctcattatccaaatggttccgttcagttccaaaataaaa 95  Q
    |||||||||| ||||||||||||||||||||| ||| | ||||| |||||    
T  5060845 taagaattctactcattatccaaatggttccgctcattcccaaagtaaaa 5060894  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 44833467 - 44833516
Alignment:
Q  46 taagaattctgctcattatccaaatggttccgttcagttccaaaataaaa 95  Q
    |||||||||||||||||| ||||||||||||||| | ||||||| |||||    
T  44833467 taagaattctgctcattacccaaatggttccgtttatttccaaagtaaaa 44833516  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 23608425 - 23608473
Alignment:
Q  47 aagaattctgctcattatccaaatggttccgttcagttccaaaataaaa 95  Q
    |||||||||||||||||| |||||| ||||||||| | |||||||||||    
T  23608425 aagaattctgctcattattcaaatgattccgttcattcccaaaataaaa 23608473  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 11821160 - 11821206
Alignment:
Q  49 gaattctgctcattatccaaatggttccgttcagttccaaaataaaa 95  Q
    |||||||||||||||||||||||||| |||||| | ||||| |||||    
T  11821160 gaattctgctcattatccaaatggtttcgttcattcccaaagtaaaa 11821206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 45688306 - 45688362
Alignment:
Q  47 aagaattctgctcattatccaaatggttccgttcagttccaaaataaaaattcaaaa 103  Q
    |||||||| |||||||||||||||||||| | ||| | ||||| ||||| |||||||    
T  45688306 aagaattccgctcattatccaaatggttctgctcattcccaaagtaaaagttcaaaa 45688362  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 12969340 - 12969288
Alignment:
Q  50 aattctgctcattatccaaatggttccgttcagttccaaaataaaaattcaaaa 103  Q
    |||||||||||||||| ||||||||||| ||| ||||||| ||||| |||||||    
T  12969340 aattctgctcattatctaaatggttccgctca-ttccaaagtaaaagttcaaaa 12969288  T

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