View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_123 (Length: 212)
Name: NF20954_low_123
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_123 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 11276919 - 11276742
Alignment:
| Q |
20 |
agggtaccctaggctttatgatgctttggtgggggtagtactagcatttaggagggtggggggttcaaaaaataaaa-catatctttctgttgcagcctt |
118 |
Q |
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| T |
11276919 |
agggtaccctaggctttatgatgctttggtgggggtagtactagcatttaggagggtggggggttcaaaaaataaaaacatatctttctgttgcagcctt |
11276820 |
T |
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| Q |
119 |
gcagggattaaatttaagttaagcagaaaaaattaaagagggtggcatgcataggaaaaattaaatttgtgtaatagt |
196 |
Q |
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| T |
11276819 |
gcagggattaaatttaagttaagcagaaaaaattaaagagggtggcatgcataggaaaaattaaatttgtgtaatagt |
11276742 |
T |
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