View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_124 (Length: 206)
Name: NF20954_low_124
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_124 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 7096289 - 7096114
Alignment:
| Q |
18 |
gtaacataggctactctcaggtgtcagttgtggttgatttttctaattcttttttcatctatttaaaaacaaaagctattgaacatcggcatatcataat |
117 |
Q |
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| T |
7096289 |
gtaacataggctactctcaggtatcagttgtggttgatttttctaattcttttttcatctatttaaaaacaaaagctattgaacatcggcatatcataat |
7096190 |
T |
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| Q |
118 |
taagaaatatttaaatttaaatggtttatcatttgtcattaataatagtgcatcaatgtcgtcattggagtataat |
193 |
Q |
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| T |
7096189 |
taagaaatatttaaatttaaatggtttatcatttgtcattaataatagtgcattaatgtcgtcattggattataat |
7096114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 7584926 - 7585012
Alignment:
| Q |
72 |
tcatctatttaaaaacaaaagctattgaacatcggcatatcataattaagaaatatttaaatttaaatgg-tttatcatttgtcatta |
158 |
Q |
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| T |
7584926 |
tcatctatttaaaa-caataactattgaatattggcatatcataattaagaaatatttaaatttaaatggttttatcatttgtcatta |
7585012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 9623885 - 9623999
Alignment:
| Q |
36 |
aggtgtcagttgtggttgatttttctaattcttttttcatctatttaaaaacaaaagctattgaacatcggcatatcataattaagaaa-tatttaaatt |
134 |
Q |
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| T |
9623885 |
aggtgtcagttgtagttgatttttgtaatt--tttttcatctatttaaaaacaaaaactattgaacattggcatatcataattaaaaaattaaataaatt |
9623982 |
T |
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| Q |
135 |
taaatggtttatcattt |
151 |
Q |
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| T |
9623983 |
taaatggtttatcattt |
9623999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 13613360 - 13613246
Alignment:
| Q |
36 |
aggtgtcagttgtggttgatttttctaattcttttttcatctatttaaaaacaaaagctattgaacatcggcatatcataattaagaaa-tatttaaatt |
134 |
Q |
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| T |
13613360 |
aggtgtcagttgtagttgatttttgtaatt--tttttcatctatttaaaaacaaaaactattgaacattggcatatcataattaaaaaattaaataaatt |
13613263 |
T |
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| Q |
135 |
taaatggtttatcattt |
151 |
Q |
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| T |
13613262 |
taaatggtttatcattt |
13613246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 17980437 - 17980299
Alignment:
| Q |
18 |
gtaacataggctactctcaggtgtcagttgtggttgatttttctaattcttttttcatctatttaaaaacaaaagctattgaacat-cggcatatcataa |
116 |
Q |
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||||| ||||||| |||||||||||| ||||||||||||||| ||| |||||||||| ||||||||| || |||| || | |||||| |||| |
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| T |
17980437 |
gtaacttaggctattctcaggtgtcatttgtggttgatttttgtaaaaaaaaaatcatctattttaaaacaaaaaatactgaaaattcagcatatgataa |
17980338 |
T |
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| Q |
117 |
ttaagaaatatttaaatttaaatggtttatcatttgtca |
155 |
Q |
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| T |
17980337 |
ttaagaaatatttaaatttaaatggtttatcatttgtca |
17980299 |
T |
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