View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_low_126 (Length: 202)

Name: NF20954_low_126
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_low_126
NF20954_low_126
[»] chr8 (8 HSPs)
chr8 (1-148)||(40512583-40512739)
chr8 (41-88)||(574376-574423)
chr8 (41-88)||(6038297-6038344)
chr8 (48-83)||(39201447-39201482)
chr8 (55-88)||(3757979-3758012)
chr8 (47-88)||(24195247-24195288)
chr8 (60-88)||(18422475-18422503)
chr8 (49-89)||(33445570-33445610)
[»] chr4 (10 HSPs)
chr4 (47-88)||(27655729-27655770)
chr4 (49-89)||(41346756-41346796)
chr4 (54-88)||(20403190-20403224)
chr4 (47-88)||(7282555-7282596)
chr4 (47-88)||(27871400-27871441)
chr4 (47-88)||(52936639-52936680)
chr4 (49-89)||(14136091-14136131)
chr4 (49-89)||(25999397-25999437)
chr4 (49-89)||(35151457-35151497)
chr4 (48-88)||(42756128-42756168)
[»] chr7 (8 HSPs)
chr7 (42-88)||(43539126-43539172)
chr7 (42-88)||(8318834-8318880)
chr7 (40-89)||(964762-964811)
chr7 (55-88)||(29734812-29734845)
chr7 (55-88)||(37307896-37307929)
chr7 (49-90)||(45914401-45914442)
chr7 (49-89)||(2391007-2391047)
chr7 (52-88)||(27908742-27908778)
[»] chr1 (9 HSPs)
chr1 (43-88)||(13401591-13401636)
chr1 (41-89)||(50372382-50372430)
chr1 (50-88)||(13779579-13779617)
chr1 (55-88)||(3528491-3528524)
chr1 (47-88)||(12213991-12214032)
chr1 (54-90)||(14392-14428)
chr1 (49-85)||(6818943-6818979)
chr1 (49-89)||(32030926-32030966)
chr1 (52-88)||(50533074-50533110)
[»] chr2 (9 HSPs)
chr2 (49-89)||(30243250-30243290)
chr2 (49-88)||(22571887-22571926)
chr2 (43-88)||(23782861-23782906)
chr2 (49-89)||(9459078-9459118)
chr2 (60-88)||(29896316-29896344)
chr2 (49-89)||(30089049-30089089)
chr2 (49-89)||(30125653-30125693)
chr2 (48-88)||(30799110-30799150)
chr2 (52-88)||(37984358-37984394)
[»] scaffold0350 (1 HSPs)
scaffold0350 (41-88)||(1240-1287)
[»] chr3 (6 HSPs)
chr3 (49-88)||(33223868-33223907)
chr3 (42-88)||(25441522-25441568)
chr3 (48-89)||(1501449-1501490)
chr3 (36-89)||(12131694-12131747)
chr3 (47-88)||(25289335-25289376)
chr3 (43-88)||(31214628-31214673)
[»] chr6 (2 HSPs)
chr6 (49-87)||(19277574-19277612)
chr6 (48-88)||(14945535-14945575)
[»] chr5 (3 HSPs)
chr5 (54-88)||(29962363-29962397)
chr5 (54-88)||(30012401-30012435)
chr5 (52-89)||(3416582-3416619)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 40512739 - 40512583
Alignment:
Q  1 cgtggtatcttgatttaatttcatatgtaaactgttgttaatgtctttgtgaacttagctcagttgatagaaacaatgcataatatata---------ag 91  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||| ||||| |||||||||||         ||    
T  40512739 cgtggtatcttaatttaatttcatatgtaaactgttgttagtgtctttgtgagcttaactcagttggtagagacaatacataatatatacaaggtatgag 40512640  T
Q  92 accaccataaaaaatatacaacctgttggtgtttaaatctatcatccttcacttatg 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40512639 accaccataaaaaatatacaacctgttggtgtttaaatctatcatccttcacttatg 40512583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 574376 - 574423
Alignment:
Q  41 atgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||    
T  574376 atgtccttgtgagcttagctcagttgatatagacaatgcataatatat 574423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 6038344 - 6038297
Alignment:
Q  41 atgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||    
T  6038344 atgtcttcgtgaacttagctcagttgatatggacaatgcataatatat 6038297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 39201447 - 39201482
Alignment:
Q  48 tgtgaacttagctcagttgatagaaacaatgcataa 83  Q
    ||||| ||||||||||||||||||||||||||||||    
T  39201447 tgtgatcttagctcagttgatagaaacaatgcataa 39201482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 3758012 - 3757979
Alignment:
Q  55 ttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||||||||||||| |||||||||||||||||    
T  3758012 ttagctcagttgataggaacaatgcataatatat 3757979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 24195247 - 24195288
Alignment:
Q  47 ttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||||||||||||||||||||  |||||| ||||||||||    
T  24195247 ttgtgaacttagctcagttgatatgaacaatacataatatat 24195288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 18422503 - 18422475
Alignment:
Q  60 tcagttgatagaaacaatgcataatatat 88  Q
    |||||||||||||||||||||||||||||    
T  18422503 tcagttgatagaaacaatgcataatatat 18422475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 33445570 - 33445610
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    |||| ||||||||||||| ||| ||||||||||||||||||    
T  33445570 gtgagcttagctcagttggtaggaacaatgcataatatata 33445610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 27655729 - 27655770
Alignment:
Q  47 ttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  27655729 ttgtgaacttagttcagttgatagaaacaatgcataatatat 27655770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 41346756 - 41346796
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  41346756 gtgaacttaactcaattgatagaaacaatgcataatatata 41346796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 20403224 - 20403190
Alignment:
Q  54 cttagctcagttgatagaaacaatgcataatatat 88  Q
    ||||||||||||||||| |||||||||||||||||    
T  20403224 cttagctcagttgataggaacaatgcataatatat 20403190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 7282555 - 7282596
Alignment:
Q  47 ttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  7282555 ttgtgaacttagctcagttggtatgaacaatgcataatatat 7282596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 27871441 - 27871400
Alignment:
Q  47 ttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||||||||||||| |||||||| |||||| |||||||||    
T  27871441 ttgtgaacttagctcatttgatagagacaatgtataatatat 27871400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 52936639 - 52936680
Alignment:
Q  47 ttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||| |||| |||||||||||||||||||| |||||||||    
T  52936639 ttgtgagcttaactcagttgatagaaacaatgtataatatat 52936680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 14136091 - 14136131
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    |||| |||||||||||||||| | |||||||||||||||||    
T  14136091 gtgagcttagctcagttgataaagacaatgcataatatata 14136131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 25999397 - 25999437
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  25999397 gtgaacttagctcagttggtagggacaatgcataatatata 25999437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 35151457 - 35151497
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    ||||||||||||||||| ||| ||||||||||||| |||||    
T  35151457 gtgaacttagctcagtttatataaacaatgcataaaatata 35151497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 42756168 - 42756128
Alignment:
Q  48 tgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    ||||||||||||||||||||||   ||||||||||||||||    
T  42756168 tgtgaacttagctcagttgataaggacaatgcataatatat 42756128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 43539172 - 43539126
Alignment:
Q  42 tgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||||    
T  43539172 tgtccttgtgagcttagctcagttgataggaacaatgcataatatat 43539126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 8318834 - 8318880
Alignment:
Q  42 tgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    ||||| ||||| |||| ||||||||||||||||||||||||| ||||    
T  8318834 tgtctctgtgagcttaactcagttgatagaaacaatgcataacatat 8318880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 964811 - 964762
Alignment:
Q  40 aatgtctttgtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    |||||| | |||| |||| |||||| ||||||||||||||||||||||||    
T  964811 aatgtcctcgtgagcttaactcagtcgatagaaacaatgcataatatata 964762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 29734845 - 29734812
Alignment:
Q  55 ttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||||||| |||||||||||||||||||||||    
T  29734845 ttagctcagtcgatagaaacaatgcataatatat 29734812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 37307929 - 37307896
Alignment:
Q  55 ttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||||||||||||| |||||||||||||||||    
T  37307929 ttagctcagttgataggaacaatgcataatatat 37307896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 45914442 - 45914401
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatatataa 90  Q
    |||||||||| | |||||||||| ||||||||||||||||||    
T  45914442 gtgaacttagtttagttgatagagacaatgcataatatataa 45914401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 2391007 - 2391047
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  2391007 gtgaacttagctcagttggtaagaacaatgcataatatata 2391047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 27908778 - 27908742
Alignment:
Q  52 aacttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  27908778 aacttaactcagttgatagaaacaatgcttaatatat 27908742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 13401591 - 13401636
Alignment:
Q  43 gtctttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||||    
T  13401591 gtctttgtgagcttagttcagttgatagagacaatgcataatatat 13401636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 50372430 - 50372382
Alignment:
Q  41 atgtctttgtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    ||||| ||| || |||||||||||||||| |||||||||||||||||||    
T  50372430 atgtcattgcgagcttagctcagttgatataaacaatgcataatatata 50372382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 13779579 - 13779617
Alignment:
Q  50 tgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  13779579 tgaacttagctcagttgatatagacaatgcataatatat 13779617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 3528524 - 3528491
Alignment:
Q  55 ttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||||||||||||||||||||| |||||||||    
T  3528524 ttagctcagttgatagaaacaatgtataatatat 3528491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 12213991 - 12214032
Alignment:
Q  47 ttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||| ||||||||||||||||| |||||| ||||||||||    
T  12213991 ttgtgagcttagctcagttgataggaacaatacataatatat 12214032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 14392 - 14428
Alignment:
Q  54 cttagctcagttgatagaaacaatgcataatatataa 90  Q
    ||||||||||||| || ||||||||||||||||||||    
T  14392 cttagctcagttggtataaacaatgcataatatataa 14428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 6818943 - 6818979
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataata 85  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  6818943 gtgagctttgctcagttgatagaaacaatgcataata 6818979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 32030966 - 32030926
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  32030966 gtgaacttagctcagttgttagggacaatgcataatatata 32030926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 50533074 - 50533110
Alignment:
Q  52 aacttagctcagttgatagaaacaatgcataatatat 88  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  50533074 aacttagctcagttggtagaaacattgcataatatat 50533110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 30243250 - 30243290
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  30243250 gtgaacttagctcagttggtagagacaatgcataatatata 30243290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 22571926 - 22571887
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  22571926 gtgaacttagctcagttgatatagacaatgcataatatat 22571887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 23782861 - 23782906
Alignment:
Q  43 gtctttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||||||| |||||||| |||| ||| |||||||||||||||||    
T  23782861 gtctttgtgatcttagctctgttggtaggaacaatgcataatatat 23782906  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 9459118 - 9459078
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    |||| |||||||||||||||| | |||||||||||||||||    
T  9459118 gtgagcttagctcagttgataaagacaatgcataatatata 9459078  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 29896344 - 29896316
Alignment:
Q  60 tcagttgatagaaacaatgcataatatat 88  Q
    |||||||||||||||||||||||||||||    
T  29896344 tcagttgatagaaacaatgcataatatat 29896316  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 30089049 - 30089089
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  30089049 gtgaacttagctcagttggtagggacaatgcataatatata 30089089  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 30125653 - 30125693
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  30125653 gtgaacttagctcagttggtagggacaatgcataatatata 30125693  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 30799150 - 30799110
Alignment:
Q  48 tgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    ||||||||||  ||||||| |||||||||||||||||||||    
T  30799150 tgtgaacttatttcagttggtagaaacaatgcataatatat 30799110  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 37984358 - 37984394
Alignment:
Q  52 aacttagctcagttgatagaaacaatgcataatatat 88  Q
    ||||||||||||||| || ||||||||||||||||||    
T  37984358 aacttagctcagttggtataaacaatgcataatatat 37984394  T

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Target: scaffold0350 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 1240 - 1287
Alignment:
Q  41 atgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||    
T  1240 atgtcttcgtgaacttagctcagttgatatggacaatgcataatatat 1287  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 33223868 - 33223907
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  33223868 gtgagcttagctcagttggtagaaacaatgcataatatat 33223907  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 25441568 - 25441522
Alignment:
Q  42 tgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    ||||||||||||||||||||||||| ||   ||||||||||||||||    
T  25441568 tgtctttgtgaacttagctcagttggtatggacaatgcataatatat 25441522  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 1501449 - 1501490
Alignment:
Q  48 tgtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    |||||||||||||||||| ||| | |||||||||||||||||    
T  1501449 tgtgaacttagctcagttaataaagacaatgcataatatata 1501490  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 12131747 - 12131694
Alignment:
Q  36 tgttaatgtctttgtgaacttagctcagttgatagaaacaatgcataatatata 89  Q
    ||||||||||||||||| ||||| ||| ||| || | |||||||||||||||||    
T  12131747 tgttaatgtctttgtgagcttagttcaattggtatagacaatgcataatatata 12131694  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 25289376 - 25289335
Alignment:
Q  47 ttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||||||||||||||||| || |||||||| |||||||||    
T  25289376 ttgtgaacttagctcagttggtaaaaacaatgtataatatat 25289335  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 31214628 - 31214673
Alignment:
Q  43 gtctttgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    |||||||||||||||| | ||||| |||||| ||||||||||||||    
T  31214628 gtctttgtgaacttagttaagttggtagaaataatgcataatatat 31214673  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 19277574 - 19277612
Alignment:
Q  49 gtgaacttagctcagttgatagaaacaatgcataatata 87  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  19277574 gtgaacttaactcagttgataggaacaatgcataatata 19277612  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 14945575 - 14945535
Alignment:
Q  48 tgtgaacttagctcagttgatagaaacaatgcataatatat 88  Q
    ||||| |||||||||||||||||| ||| ||||||||||||    
T  14945575 tgtgagcttagctcagttgatagagacagtgcataatatat 14945535  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 29962363 - 29962397
Alignment:
Q  54 cttagctcagttgatagaaacaatgcataatatat 88  Q
    ||||||||||||||||||||||||| |||||||||    
T  29962363 cttagctcagttgatagaaacaatgtataatatat 29962397  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 30012435 - 30012401
Alignment:
Q  54 cttagctcagttgatagaaacaatgcataatatat 88  Q
    ||||||||||||||||||||||||| |||||||||    
T  30012435 cttagctcagttgatagaaacaatgtataatatat 30012401  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 3416619 - 3416582
Alignment:
Q  52 aacttagctcagttgatagaaacaatgcataatatata 89  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  3416619 aacttaactcagttgatagaaacaatgtataatatata 3416582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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