View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_low_15 (Length: 529)

Name: NF20954_low_15
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_low_15
NF20954_low_15
[»] chr2 (4 HSPs)
chr2 (20-519)||(40059682-40060190)
chr2 (20-388)||(40077764-40078129)
chr2 (20-519)||(40085569-40086078)
chr2 (442-505)||(40078205-40078268)
[»] chr7 (1 HSPs)
chr7 (120-227)||(35052652-35052758)
[»] chr5 (2 HSPs)
chr5 (101-218)||(12735460-12735579)
chr5 (101-218)||(12798287-12798406)
[»] chr4 (3 HSPs)
chr4 (313-388)||(22015579-22015654)
chr4 (20-76)||(22015825-22015881)
chr4 (144-221)||(22015667-22015744)
[»] chr3 (1 HSPs)
chr3 (101-227)||(53322735-53322862)


Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 20 - 519
Target Start/End: Original strand, 40059682 - 40060190
Alignment:
Q  20 tatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059682 tatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttca 40059781  T
Q  120 tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40059782 tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattccggggattaagttccgaactgataatgaaccatttaaggtag 40059881  T
Q  220 aggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgcta 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059882 aggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgcta 40059981  T
Q  320 agattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcaggnnnnnnnatcactaaatacaagtattgcgag 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| ||| |||||    
T  40059982 agattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcaggtttttttatcactaaatacaattatagcgag 40060081  T
Q  420 tatatttttgtaga-----------taaagtttatatttgttaatgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagacatcga 508  Q
    ||||||||||||||            |||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  40060082 tatatttttgtagacatattaaggtcaaagttaatatttgttaatgtgagagtatttgtgc--tctattgccagattgaaaatgagtatggagacatcga 40060179  T
Q  509 ttcagcctatg 519  Q
    |||||||||||    
T  40060180 ttcagcctatg 40060190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 40077764 - 40078129
Alignment:
Q  20 tatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttca 119  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||      ||| |||||  |||||||||| ||||||||    
T  40077764 tatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaactacgggtaaagtttggtcc----tttctgtgtattatttttctgtggtgttca 40077859  T
Q  120 t--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggt 217  Q
    |  ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  40077860 tgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggt 40077959  T
Q  218 agaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgc 317  Q
    || | ||||| | || |||||||||| | | |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||| ||||||||||    
T  40077960 ag-gctaaccttcaccctgttgcttcatgcatttgtccttaaatctgagttcacttgacaggaaactttgtcttcaggccgaaatgaagcgattcaccgc 40078058  T
Q  318 taagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg 388  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40078059 taagattgtcgatctcatgaagcaagagaaactgtatgcatcacaaggaggacctataattttatctcagg 40078129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 519
Target Start/End: Original strand, 40085569 - 40086078
Alignment:
Q  20 tatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttca 119  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||    |||||||||||  ||| ||||  |||||||||    
T  40085569 tatatgtgcatctccggattggtccatatgtttgttctgaatggaactatgggtaaagtttggt----aatttatgtgtattatatttcgagggtgttca 40085664  T
Q  120 t--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggt 217  Q
    |  ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  40085665 tgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggt 40085764  T
Q  218 agaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgc 317  Q
    | || ||||| | | ||   |||||| | |||||||||||  | ||||||||||||| || |||| ||||||||||||  ||||||||| |||||||| |    
T  40085765 a-agttaaccttcagtccagtgcttcatgcttttgtccttgga-ctgagttcacttgacaggaaactttgtcttcaggttgaaatgaagcgattcaccac 40085862  T
Q  318 taagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcaggnnnnnnnatcacta-----aatacaagta 412  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       ||||  |     ||||||||||    
T  40085863 taagattgtcgacctcatgaagcaagagaaactgtatgcatcacaaggaggacctataattttatctcaggtttttttatcatgaaatacaatacaagta 40085962  T
Q  413 ttgcgagtatatttttgtagat---------aaagtttatatttgttaatgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagac 503  Q
    | |  | |||||| ||| ||||         ||||||||||||||||||||||||||| |||||| |||||| || ||||| ||||||||||||||||||    
T  40085963 tagttaatatattcttgaagatattaaggtcaaagtttatatttgttaatgtgagagtgtttgtgatttctaatgacagatagaaaatgagtatggagac 40086062  T
Q  504 atcgattcagcctatg 519  Q
    ||||||||||||||||    
T  40086063 atcgattcagcctatg 40086078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 442 - 505
Target Start/End: Original strand, 40078205 - 40078268
Alignment:
Q  442 atatttgttaatgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagacat 505  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  40078205 atatttgttaatgtgagagtatttgtgctttctaatgccagattgaaaatgagtatggaaacat 40078268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 35052758 - 35052652
Alignment:
Q  120 tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag 219  Q
    |||||| |||||||||||||||||||||||||||  ||||||||| ||||||||||||| ||||||| ||||| ||| || ||||||||||||||||||     
T  35052758 tctaattgagggctttaacttcttaacagtggttaacctctttggattcacttcattccagggattaggttccaaacagacaatgaaccatttaaggta- 35052660  T
Q  220 aggtaacc 227  Q
    ||||||||    
T  35052659 aggtaacc 35052652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 12735579 - 12735460
Alignment:
Q  101 tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg 198  Q
    |||||| ||||||| |||||  ||||| ||||||||||||||||||| |||||||  ||||||||| ||||||||||||| ||||||||||||| ||  |    
T  12735579 tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag 12735480  T
Q  199 ataatgaaccatttaaggta 218  Q
    | ||||||||||||||||||    
T  12735479 acaatgaaccatttaaggta 12735460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 12798406 - 12798287
Alignment:
Q  101 tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg 198  Q
    |||||| ||||||| |||||  ||||| ||||||||||||||||||| |||||||  ||||||||| ||||||||||||| ||||||||||||| ||  |    
T  12798406 tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag 12798307  T
Q  199 ataatgaaccatttaaggta 218  Q
    | ||||||||||||||||||    
T  12798306 acaatgaaccatttaaggta 12798287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 313 - 388
Target Start/End: Complemental strand, 22015654 - 22015579
Alignment:
Q  313 accgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg 388  Q
    |||||||||||||||||| | |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  22015654 accgctaagattgtcgatatgatgaagcaagagaacctctatgcatcacaaggaggacctataattttatctcagg 22015579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 22015881 - 22015825
Alignment:
Q  20 tatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaa 76  Q
    |||||||||||||||| |||||||||||||| |||||||||||||| || |||||||    
T  22015881 tatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaattacgggtaaa 22015825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 22015744 - 22015667
Alignment:
Q  144 aacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagag 221  Q
    |||||||||||||| |||||| | || || ||| | || ||||||||||||||| ||||||||||||| |||| ||||    
T  22015744 aacagtggtttccccctttggttgcattttattgctggaattaagttccgaactaataatgaaccattcaaggcagag 22015667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 53322735 - 53322862
Alignment:
Q  101 tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg 198  Q
    |||||||||||||| |||||  ||||| ||||||||||||||||||| | |||||  ||||||||  ||||||||||||| ||||||||||||| ||  |    
T  53322735 tatttttctggggtcttcatttctaattgagggctttaacttcttaagattggttaacctctttgtattcacttcattccagggattaagttccaaatcg 53322834  T
Q  199 ataatgaaccatttaaggtagaggtaacc 227  Q
    | |||||||||||||||||| ||||||||    
T  53322835 acaatgaaccatttaaggta-aggtaacc 53322862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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