View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_low_2 (Length: 934)

Name: NF20954_low_2
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_low_2
NF20954_low_2
[»] chr8 (9 HSPs)
chr8 (1-444)||(42126019-42126458)
chr8 (493-919)||(42125548-42125969)
chr8 (1-78)||(13884488-13884565)
chr8 (1-77)||(42126655-42126731)
chr8 (1-85)||(11867953-11868036)
chr8 (1-77)||(13884759-13884835)
chr8 (1-78)||(29714541-29714618)
chr8 (1-52)||(2554121-2554172)
chr8 (1-78)||(43416262-43416339)
[»] scaffold0098 (2 HSPs)
scaffold0098 (188-349)||(46075-46236)
scaffold0098 (78-195)||(46307-46423)
[»] chr4 (11 HSPs)
chr4 (78-195)||(40971173-40971289)
chr4 (212-289)||(40970955-40971032)
chr4 (185-256)||(40971033-40971104)
chr4 (1-80)||(55173524-55173603)
chr4 (1-83)||(39161282-39161364)
chr4 (1-79)||(39161558-39161636)
chr4 (1-79)||(47096798-47096875)
chr4 (8-84)||(55173327-55173403)
chr4 (1-79)||(47097068-47097146)
chr4 (1-78)||(50509399-50509476)
chr4 (78-184)||(27256836-27256941)
[»] chr3 (12 HSPs)
chr3 (220-349)||(3738471-3738599)
chr3 (1-78)||(51663521-51663598)
chr3 (1-83)||(40244619-40244701)
chr3 (866-907)||(10172667-10172708)
chr3 (1-76)||(20538205-20538280)
chr3 (15-78)||(40244873-40244936)
chr3 (1-52)||(46003519-46003570)
chr3 (1-79)||(46003246-46003324)
chr3 (1-74)||(40364228-40364301)
chr3 (224-273)||(347105-347153)
chr3 (1-78)||(40364040-40364117)
chr3 (1-82)||(51663245-51663326)
[»] chr5 (3 HSPs)
chr5 (128-195)||(38935551-38935619)
chr5 (1-82)||(21249357-21249438)
chr5 (208-274)||(38935715-38935783)
[»] chr6 (10 HSPs)
chr6 (1-79)||(24690353-24690431)
chr6 (1-77)||(2216849-2216925)
chr6 (1-81)||(11644018-11644099)
chr6 (1-75)||(24690617-24690691)
chr6 (128-195)||(14863175-14863243)
chr6 (208-266)||(14863020-14863080)
chr6 (1-81)||(24798893-24798973)
chr6 (1-72)||(11643754-11643825)
chr6 (5-79)||(18494732-18494805)
chr6 (1-78)||(24798624-24798701)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-78)||(22976-23053)
[»] chr7 (7 HSPs)
chr7 (1-82)||(28715913-28715994)
chr7 (5-78)||(41986183-41986256)
chr7 (1-80)||(30862215-30862294)
chr7 (1-79)||(28715640-28715718)
chr7 (9-78)||(41985909-41985978)
chr7 (1-52)||(47373733-47373784)
chr7 (12-82)||(6474562-6474632)
[»] chr2 (15 HSPs)
chr2 (1-78)||(40987656-40987733)
chr2 (1-79)||(44594246-44594325)
chr2 (1-78)||(2916377-2916454)
chr2 (2-79)||(13559573-13559650)
chr2 (1-77)||(16973064-16973140)
chr2 (1-82)||(38982552-38982633)
chr2 (1-52)||(24125924-24125975)
chr2 (1-79)||(11533716-11533794)
chr2 (1-75)||(44594509-44594583)
chr2 (9-78)||(16973343-16973412)
chr2 (1-52)||(24126194-24126245)
chr2 (8-71)||(40987924-40987987)
chr2 (4-52)||(2916651-2916699)
chr2 (10-77)||(24125670-24125737)
chr2 (1-52)||(38982828-38982879)
[»] scaffold0781 (1 HSPs)
scaffold0781 (1-77)||(5306-5382)
[»] chr1 (8 HSPs)
chr1 (1-79)||(10824640-10824718)
chr1 (1-76)||(15825792-15825865)
chr1 (1-81)||(37189619-37189699)
chr1 (1-79)||(18844719-18844798)
chr1 (1-78)||(22683140-22683217)
chr1 (1-77)||(37189368-37189443)
chr1 (1-52)||(18844484-18844535)
chr1 (1-79)||(19056422-19056500)


Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 42126458 - 42126019
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaattatttatgtcacactaa 100  Q
    |||||| |||||||||||||||| ||| |||||||||| ||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||    
T  42126458 aaattgatacaaattatagttagagaatcaaattgagacaattaattaagttaagggaccgggtgattgaataagcctaaaattatttatgtcacactaa 42126359  T
Q  101 ataccaaaactcttccattttataaactttatgaaaagcaaatgatattttagagaaaaccaaaattagcgcacaaaacccttcatagttgagacaatta 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42126358 ataccaaaactcttccattttatgaactttatgaaaagcaaatgatattttagagaaaaccaaaattagcgcacaaaacccttcatagttgagacaatta 42126259  T
Q  201 aatcagctattttataattaaagagttatgaaagagtgatgaaaagaaaatgagagaaagccacatgacattagcatgaaagattagtttgaacggagga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||||    
T  42126258 aatcagctattttataattaaagagttatgaaagagtgatgaaaagaaaatgagagaaattcacgtgacattagcattaaagattagtttgaacggagga 42126159  T
Q  301 attttggtgggatgacacataagaaaattgcaccttaaaatacatgtatgtatgtatgaagaggttttttagagtgccacatgggcacaatctaagcata 400  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||| |||||||||||||||||    
T  42126158 gttttggtgagatgacacataagaaaattgcaccttaaaatacatgtatg----tatgaagaggttttttagagtgccacataggcacaatctaagcata 42126063  T
Q  401 aggttaactcaagtttaaaagtcaacatagtattctaattttaa 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42126062 aggttaactcaagtttaaaagtcaacatagtattctaattttaa 42126019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 493 - 919
Target Start/End: Complemental strand, 42125969 - 42125548
Alignment:
Q  493 gttaatttgaatgaagataatatttgaggaacatataaagtaataaaaacatacttatgttatcacggagaatatagattagagttggtcggataattac 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||||    
T  42125969 gttaatttgaatgaagataatatttgaggaacatataaagtaataaaaatatacttatgctatcacggagaatatagattagaattgatcggataattac 42125870  T
Q  593 agatgggacaatccagtctcatcctaatttttcttaacccagatgagacattctatttgtgttnnnnnnnnnnnnnnnngtattttttatattataaaaa 692  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||                  |||    ||||||||||||    
T  42125869 agatgggacaatccagtctcatcctaatttttcttaactcagatgagacattctatttgtgttaaataaaaaaataaaaaaatt----atattataaaaa 42125774  T
Q  693 tgccgtattcatagagtatacaattcatggtttaagcggaacttccttnnnnnnnn-tggtttaagcgtaactaattaaaacctagattactaaaatata 791  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||| |||||||||||||||||||||||||| ||||    
T  42125773 tgccgtattcatagagtatacaattcatggtttaagcggaacttccttaaaaaaaaatggtttaagcggaactaattaaaacctagattactaaa-tata 42125675  T
Q  792 tacatgattataggatatagatagaagtgatatatcttgtcttcttgcaaacttaacttcaatatgcgtgtaataagaattaagaaataaaatcatatcc 891  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42125674 tacatgattatag-atatagatagaagtgatatatcttgtcttcttgcaaacttaacttcaatatgcgtgtaataagaattaagaaataaaatcatatcc 42125576  T
Q  892 atataagagaataaactgaagaagcaat 919  Q
    ||||||||||||||||||||||||||||    
T  42125575 atataagagaataaactgaagaagcaat 42125548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 13884565 - 13884488
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||||||| ||  |||||||||||||||||||||    
T  13884565 aaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcct 13884488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42126655 - 42126731
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 77  Q
    ||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||  ||||||||||||||||||||    
T  42126655 aaattggtacaaattatagttaggggatcaaattgagataatcaattaagttaagggaccgggtgattgaataagcc 42126731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 11867953 - 11868036
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaatta 85  Q
    |||||| ||||||||||||||| ||||||||||||||| ||| ||||||||| ||  ||| ||||||||||||||||||||||||    
T  11867953 aaattgatacaaattatagttaaggaaccaaattgagacaatcaattaagttaag-gaccaggtgattgaataagcctaaaatta 11868036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 13884759 - 13884835
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 77  Q
    ||||||||||||||||||||||||| || ||||||||| ||| ||||||||| ||  ||||||||||||||||||||    
T  13884759 aaattggtacaaattatagttaggggactaaattgagacaatcaattaagttaagggaccgggtgattgaataagcc 13884835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29714618 - 29714541
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    ||||||||||||| ||||||| ||| |||||||||||| ||| ||||||||| ||  |||||||||||||||||||||    
T  29714618 aaattggtacaaactatagtttggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcct 29714541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2554121 - 2554172
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagtt 52  Q
    ||||||| ||||||||||||||||| | |||||||||| ||| |||||||||    
T  2554121 aaattggaacaaattatagttaggggatcaaattgagacaatcaattaagtt 2554172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 43416339 - 43416262
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    |||||| |||||||||||||||||| |  ||||| ||| ||| ||||||||| ||  ||||  |||||||||||||||    
T  43416339 aaattgatacaaattatagttaggggattaaattaagacaatcaattaagttaagagaccgaatgattgaataagcct 43416262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 188 - 349
Target Start/End: Complemental strand, 46236 - 46075
Alignment:
Q  188 gttgagacaattaaatcagctattttataattaaagagttatgaaagagtgatgaaaagaaaatgagagaaagccacatgacattagcatgaaagattag 287  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||| |||     
T  46236 gttgtgacaattaaatcagccattttataattaaagagttatgaaagagtgattaaaagaaaaggagagaaagccacatggcattagtatgaaagtttat 46137  T
Q  288 tttgaacggaggaattttggtgggatgacacataagaaaattgcaccttaaaatacatgtat 349  Q
    || | | || ||| |||||||| | ||| | ||||| ||| || | |||| |||||||||||    
T  46136 ttaggaagggggagttttggtgaggtgatatataagcaaaatgtagcttagaatacatgtat 46075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 78 - 195
Target Start/End: Complemental strand, 46423 - 46307
Alignment:
Q  78 taaaattatttatgtcacactaaataccaaaactcttccattttataaactttatgaaaagcaaatgata-ttttagagaaaaccaaaattagcgcacaa 176  Q
    ||||| |||||||||||| |||||||| ||||||||| |||| ||| ||||||  ||||| ||||||||| ||||||||||||| ||| |||||||||||    
T  46423 taaaaatatttatgtcacgctaaatactaaaactctttcattgtatgaacttt--gaaaaccaaatgataattttagagaaaacaaaagttagcgcacaa 46326  T
Q  177 aacccttcatagttgagac 195  Q
    |||||||||||||||||||    
T  46325 aacccttcatagttgagac 46307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 2e-27; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 78 - 195
Target Start/End: Complemental strand, 40971289 - 40971173
Alignment:
Q  78 taaaattatttatgtcacactaaataccaaaactcttccattttataaactttatgaaaagcaaatgatatttt-agagaaaaccaaaattagcgcacaa 176  Q
    ||||| ||||||||||||||||||||| ||||| ||| |||| ||| ||||||  ||||| ||||||||||||| ||||||||| ||| |||||||||||    
T  40971289 taaaaatatttatgtcacactaaatactaaaaccctttcattgtatgaacttt--gaaaaccaaatgatatttttagagaaaacaaaagttagcgcacaa 40971192  T
Q  177 aacccttcatagttgagac 195  Q
    |||||||||||||||||||    
T  40971191 aacccttcatagttgagac 40971173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 40971032 - 40970955
Alignment:
Q  212 ttataattaaagagttatgaaagagtgatgaaaagaaaatgagagaaagccacatgacattagcatgaaagattagtt 289  Q
    |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||| ||||||    
T  40971032 ttataattgaagagttatgaaagagtgattaaaagaaaaggagagaaagccacatggcattagtatgaaagtttagtt 40970955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 40971104 - 40971033
Alignment:
Q  185 atagttgagacaattaaatcagctattttataattaaagagttatgaaagagtgatgaaaagaaaatgagag 256  Q
    ||||||| ||||||||||||| | ||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  40971104 atagttgtgacaattaaatcaaccattttataattgaagagttatgaaagagtgattaaaagaaaaggagag 40971033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 55173524 - 55173603
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaa 80  Q
    ||||||||||||||||||||||||  | |||||||||| ||| ||||||||| ||  |||||||||||||||||||||||    
T  55173524 aaattggtacaaattatagttaggagatcaaattgagacaatcaattaagttaagggaccgggtgattgaataagcctaa 55173603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 39161364 - 39161282
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaat 83  Q
    ||||||||||||||||||||||||| |||||||| ||| | | ||||||||| |   | ||||||||||||||||||||||||    
T  39161364 aaattggtacaaattatagttaggggaccaaattaagacattcaattaagttaaaggatcgggtgattgaataagcctaaaat 39161282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 39161558 - 39161636
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 79  Q
    ||||||||||||||||||||||||| |||||||| | | ||| ||||||||| || |||||| || |||||||||||||    
T  39161558 aaattggtacaaattatagttaggggaccaaattaaaacaatcaattaagttaaggaaccggatggttgaataagccta 39161636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 47096875 - 47096798
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 79  Q
    ||||||||||||||||| ||||||| |||||||||||||||| ||||||||| ||  | | ||||||||||||||||||    
T  47096875 aaattggtacaaattat-gttaggggaccaaattgagataatcaattaagttaagggatcaggtgattgaataagccta 47096798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 55173403 - 55173327
Alignment:
Q  8 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaatt 84  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||| || |||||| |||| ||||||||| ||||||    
T  55173403 tacaaattatagttaggggaccaaattaagacaatcaattaagttaaggaaccggatgatcgaataagccaaaaatt 55173327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 47097068 - 47097146
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 79  Q
    ||||||||||||||||||||||| | || ||||||||| ||| ||||||||| ||  | ||| ||||||||||||||||    
T  47097068 aaattggtacaaattatagttagaggactaaattgagacaatcaattaagttaagagatcggatgattgaataagccta 47097146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 50509399 - 50509476
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    ||||||||||||||||||||||||| |||||||| ||| ||| ||||||||| ||  | | | |||||||||||||||    
T  50509399 aaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggatcagatgattgaataagcct 50509476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 27256941 - 27256836
Alignment:
Q  78 taaaattatttatgtcacactaaataccaaaactcttccattttataaactttatgaaaagcaaatgatatttt-agagaaaaccaaaattagcgcacaa 176  Q
    ||||| |||||||||||||||| |||  | ||| ||| |||| ||| ||||||  ||||| ||||||||||||| ||||||||| ||| |||||||||||    
T  27256941 taaaaatatttatgtcacactagatattataaccctttcattgtatgaacttt--gaaaaccaaatgatatttttagagaaaacaaaagttagcgcacaa 27256844  T
Q  177 aacccttc 184  Q
    || |||||    
T  27256843 aatccttc 27256836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 2e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 220 - 349
Target Start/End: Original strand, 3738471 - 3738599
Alignment:
Q  220 aaagagttatgaaagagtgatgaaaagaaaatgagagaaagccacatgacattagcatgaaagattagtttgaacggaggaattttggtgggatgacaca 319  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| ||| ||| ||| ||  || |||||||| | |||||||    
T  3738471 aaagagttatgaaagagtgattaaaagaaaa-gagagaaagccacatggcattagcatgaaaaattggttagaaagggagagttttggtgaggtgacaca 3738569  T
Q  320 taagaaaattgcaccttaaaatacatgtat 349  Q
    |||| ||| || | || | |||||||||||    
T  3738570 taagcaaagtgtagctcagaatacatgtat 3738599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 51663521 - 51663598
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    |||||| |||||||||||||||||| |||||||||||| ||| ||||||||| ||  ||||| |||||||||||||||    
T  51663521 aaattgctacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagcct 51663598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 40244701 - 40244619
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaat 83  Q
    |||||||||||||||||||||| || |||||||||||| ||| ||||||||| ||  | ||| ||||||||||||||| ||||    
T  40244701 aaattggtacaaattatagttaagggaccaaattgagacaatcaattaagttaagggatcggatgattgaataagcctgaaat 40244619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 866 - 907
Target Start/End: Original strand, 10172667 - 10172708
Alignment:
Q  866 aagaattaagaaataaaatcatatccatataagagaataaac 907  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  10172667 aagaattaagaaataacatcatatccatataagagaataaac 10172708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 20538205 - 20538280
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagc 76  Q
    |||||| |||||||||||||||||| | |||||||||| ||| |||||| || |   |||||||||||||||||||    
T  20538205 aaattgatacaaattatagttaggggatcaaattgagacaatcaattaaattaaaggaccgggtgattgaataagc 20538280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 40244873 - 40244936
Alignment:
Q  15 tatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||  || ||||||||||||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaagggacggggtgattgaataagcct 40244936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 46003519 - 46003570
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagtt 52  Q
    ||||||||||||||| ||||||||| |||||||||||| ||| |||||||||    
T  46003519 aaattggtacaaattttagttaggggaccaaattgagacaatcaattaagtt 46003570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 46003324 - 46003246
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 79  Q
    |||||| |||||||||||||||||| |||||||| | | ||| ||||||||| |   ||||||||||||||||| ||||    
T  46003324 aaattgatacaaattatagttaggggaccaaattaaaacaatcaattaagttaaaggaccgggtgattgaataaaccta 46003246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 40364228 - 40364301
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataa 74  Q
    ||||||||||||||||||||||||  |||||||||| | ||| ||||||||| ||  |||  ||||||||||||    
T  40364228 aaattggtacaaattatagttaggagaccaaattgaaacaatcaattaagttaagggaccaagtgattgaataa 40364301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 347153 - 347105
Alignment:
Q  224 agttatgaaagagtgatgaaaagaaaatgagagaaagccacatgacatta 273  Q
    ||||||||||||||||| |||| |||| |||||||||||||||| |||||    
T  347153 agttatgaaagagtgattaaaataaaa-gagagaaagccacatggcatta 347105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 40364117 - 40364040
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    |||||| ||||||||||| ||| || |||||||| ||||||| ||||||||| ||  |  ||||||| ||||||||||    
T  40364117 aaattgatacaaattataattatgggaccaaattaagataatcaattaagttaagggattgggtgatcgaataagcct 40364040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 51663326 - 51663245
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaa 82  Q
    |||||| |||||||||||||||| | |||| ||| | | ||| ||||||||| ||  ||||||||||| |||||||| ||||    
T  51663326 aaattgatacaaattatagttagtggaccatattaaaacaatcaattaagttaagagaccgggtgattaaataagccaaaaa 51663245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 38935551 - 38935619
Alignment:
Q  128 tttatgaaaagcaaatgatat-tttagagaaaaccaaaattagcgcacaaaacccttcatagttgagac 195  Q
    |||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  38935551 tttatgaaaaccaaatgatatgtttagagaaaaccaaaattagcacacaaaacccttcatagttgagac 38935619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 21249438 - 21249357
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaa 82  Q
    |||||||||||| ||||| |||||| |||||||||||| ||| ||||| | | ||  ||| |||||||||||||||| ||||    
T  21249438 aaattggtacaatttataattaggggaccaaattgagacaatcaattacggtaagggaccaggtgattgaataagccgaaaa 21249357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 38935715 - 38935783
Alignment:
Q  208 tattttataattaaa--gagttatgaaagagtgatgaaaagaaaatgagagaaagccacatgacattag 274  Q
    |||||||||||||||  |||||||||||||||||| ||||||| | || |||||| |||||| ||||||    
T  38935715 tattttataattaaaaagagttatgaaagagtgattaaaagaataagaaagaaagtcacatgtcattag 38935783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 1e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 24690431 - 24690353
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 79  Q
    |||||||||||||||||||| |||| |||||||||||| ||| ||||||||| ||  ||||||||||||||||||||||    
T  24690431 aaattggtacaaattatagtaaggggaccaaattgagacaatcaattaagttaagagaccgggtgattgaataagccta 24690353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2216849 - 2216925
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 77  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||||||| ||  ||||| ||||||||||||||    
T  2216849 aaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagcc 2216925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 11644018 - 11644099
Alignment:
Q  1 aaattggtacaaattatagttaggga-accaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaa 81  Q
    |||||| ||||||||||||||||||  |||||||||||| ||| ||||||||| ||  ||||||||||||||||||||||||    
T  11644018 aaattgatacaaattatagttagggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcctaaa 11644099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24690617 - 24690691
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataag 75  Q
    |||||||||||||||||||||||||||||||||| | | ||| ||||||||| ||  | ||||||||||||||||    
T  24690617 aaattggtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggatcgggtgattgaataag 24690691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 14863243 - 14863175
Alignment:
Q  128 tttatgaaaagcaaatgatatttt-agagaaaaccaaaattagcgcacaaaacccttcatagttgagac 195  Q
    |||||||||| ||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||| ||||    
T  14863243 tttatgaaaaccaaatgacatttttagataaaaccaaaattagcacacaaaacccttcatagttaagac 14863175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 14863080 - 14863020
Alignment:
Q  208 tattttataatt--aaagagttatgaaagagtgatgaaaagaaaatgagagaaagccacat 266  Q
    ||||||||||||  ||||||||||||||||||||| ||||||| | |||||||||||||||    
T  14863080 tattttataattcaaaagagttatgaaagagtgattaaaagaataagagagaaagccacat 14863020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 24798893 - 24798973
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaa 81  Q
    |||||| |||||||||||||||||| | |||||| ||| ||| |||||| || ||  | ||||||||||||||||||||||    
T  24798893 aaattgatacaaattatagttaggggatcaaattaagacaatcaattaatttaagggatcgggtgattgaataagcctaaa 24798973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 11643825 - 11643754
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaat 72  Q
    |||||| |||||||||||||||||| | |||||||||| ||| |||||| || ||  |||||||||||||||    
T  11643825 aaattgatacaaattatagttaggggatcaaattgagacaatcaattaaattaagggaccgggtgattgaat 11643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 18494805 - 18494732
Alignment:
Q  5 tggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 79  Q
    ||||||||||||||| |||||| ||||||||||| ||| ||| ||||| ||  |||  |||||||||||||||||    
T  18494805 tggtacaaattatagctaggga-ccaaattgagacaatcaataaagttaagggaccatgtgattgaataagccta 18494732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 24798701 - 24798624
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    |||||||||||||||||||| |||| |||||||||| | ||  ||||||||| ||  ||||  | |||||||||||||    
T  24798701 aaattggtacaaattatagtcaggggaccaaattgaaacaaccaattaagttaagggaccgaataattgaataagcct 24798624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 22976 - 23053
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    ||||||||||||||||||||||||| |||||||| ||| ||| ||||||||| ||  |||||||||||||||||||||    
T  22976 aaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaataagcct 23053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 28715913 - 28715994
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaa 82  Q
    ||||||||||||||||||||||||| |||||||| ||| ||| ||||||||| ||  ||||||| |||||||||||||||||    
T  28715913 aaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtaattgaataagcctaaaa 28715994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 41986183 - 41986256
Alignment:
Q  5 tggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    ||||||||||||||||||||| | |||||||||| ||  ||||||||| || ||||||||||||||||||||||    
T  41986183 tggtacaaattatagttaggggatcaaattgagacaaacaattaagttaaggaaccgggtgattgaataagcct 41986256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 30862294 - 30862215
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaa 80  Q
    ||||||||||||||||||||||||| |||||||| ||| ||| ||||||||| ||  ||||  |||||||||||||||||    
T  30862294 aaattggtacaaattatagttaggggaccaaattcagacaatcaattaagttaagggaccgaatgattgaataagcctaa 30862215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 28715718 - 28715640
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 79  Q
    |||||| ||||||||||||||||| ||||||||| | | ||||||||||||| ||  ||||||||||||||||| ||||    
T  28715718 aaattgatacaaattatagttaggaaaccaaattaaaacaattaattaagttaagggaccgggtgattgaataaaccta 28715640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 41985978 - 41985909
Alignment:
Q  9 acaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    ||||||||||||||||| | |||||||||| ||| ||||||||| ||  || ||||||||||||||||||    
T  41985978 acaaattatagttaggggatcaaattgagacaatcaattaagttaagggactgggtgattgaataagcct 41985909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 47373733 - 47373784
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagtt 52  Q
    |||||||||||||||||| |||||| |||||||||||| ||| |||||||||    
T  47373733 aaattggtacaaattataattaggggaccaaattgagacaatcaattaagtt 47373784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 6474562 - 6474632
Alignment:
Q  12 aattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaa 82  Q
    |||||||||||||  |||||||| ||| ||| ||||||||| ||  | |||||||||||||||||||||||    
T  6474562 aattatagttaggagaccaaattaagacaatcaattaagttaagggatcgggtgattgaataagcctaaaa 6474632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 40987733 - 40987656
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||  ||||| ||||| |||||||||    
T  40987733 aaattggtacaaattatagttagggaaccaaattgagacaatcaattaagttaagggaccggatgattaaataagcct 40987656  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 44594325 - 44594246
Alignment:
Q  1 aaattggtacaaattatagttaggga-accaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 79  Q
    |||||| ||||||||||||||||||| |||||||||||| ||| ||||||||| ||  ||||||||||||||||||||||    
T  44594325 aaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagccta 44594246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 2916454 - 2916377
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    ||||||||||||||||||||||||| | |||||||||| ||| ||||||||| ||  | |||||||||||||||||||    
T  2916454 aaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagagatcgggtgattgaataagcct 2916377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 13559573 - 13559650
Alignment:
Q  2 aattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 79  Q
    ||||| ||||||||||||||||||||||||||||| | ||| ||||||||| ||  ||||| ||||||||||||||||    
T  13559573 aattgatacaaattatagttagggaaccaaattgaaacaatcaattaagttaagggaccggatgattgaataagccta 13559650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 16973140 - 16973064
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 77  Q
    ||||||||||||| ||||||||||| |||||||| ||| ||| ||||||||| ||  ||||||||||||||||||||    
T  16973140 aaattggtacaaactatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaataagcc 16973064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38982633 - 38982552
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaaa 82  Q
    |||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |   | ||||||||||| |||||| ||||    
T  38982633 aaattggtacaaattatagttagggagccaaattgagacaatcaattaagttaaaggatcgggtgattgattaagccaaaaa 38982552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24125924 - 24125975
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagtt 52  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  24125924 aaattggtacaaattatagttaggagaccaaattgagaaaattaattaagtt 24125975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 11533716 - 11533794
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 79  Q
    ||||||||||||||||||||| ||| |||||||||||| ||| | ||||||| ||  ||| | ||||||||||||||||    
T  11533716 aaattggtacaaattatagttgggggaccaaattgagacaatcacttaagttaagagacctgatgattgaataagccta 11533794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 44594509 - 44594583
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataag 75  Q
    |||||| |||||||||||||||||| |||||||||||| ||| |||||| || |   ||||||||||||||||||    
T  44594509 aaattgatacaaattatagttaggggaccaaattgagacaatcaattaaattaaaggaccgggtgattgaataag 44594583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 16973343 - 16973412
Alignment:
Q  9 acaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    ||||||||||||||||| |||||||||||| ||| ||||||||| ||  |||  ||||||||||||||||    
T  16973343 acaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccatgtgattgaataagcct 16973412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24126194 - 24126245
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagtt 52  Q
    ||||||||||||||||||||||||  |||||||||||| ||| |||||||||    
T  24126194 aaattggtacaaattatagttaggagaccaaattgagaaaatcaattaagtt 24126245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 40987924 - 40987987
Alignment:
Q  8 tacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaa 71  Q
    |||||||||||||||| | | |||||||||| ||||||||||||| ||  ||||||||||||||    
T  40987924 tacaaattatagttagaggatcaaattgagacaattaattaagttaagagaccgggtgattgaa 40987987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 2916651 - 2916699
Alignment:
Q  4 ttggtacaaattatagttagggaaccaaattgagataattaattaagtt 52  Q
    ||||||||||| |||||||||| |||||||||||| ||| |||||||||    
T  2916651 ttggtacaaataatagttaggggaccaaattgagacaatcaattaagtt 2916699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 24125737 - 24125670
Alignment:
Q  10 caaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 77  Q
    |||||||||||||||| | |||||||||| ||| ||||||||| ||  ||||| ||| ||||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccggttgagtgaataagcc 24125670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38982828 - 38982879
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagtt 52  Q
    |||||| ||||||||||||||| || |||||||||||| ||| |||||||||    
T  38982828 aaattgatacaaattatagttaagggaccaaattgagacaatcaattaagtt 38982879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5306 - 5382
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 77  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||||||| ||  ||||| ||||||||||||||    
T  5306 aaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagcc 5382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 10824640 - 10824718
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 79  Q
    |||||| |||||||||||||||||| |||||||||||| ||| ||||||||| ||  ||||| ||||||||||||||||    
T  10824640 aaattgatacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagccta 10824718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 15825792 - 15825865
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagc 76  Q
    ||||||||||||||||||||||||  |||||||||||| ||| ||||||||| ||  |||||||||||||||||||    
T  15825792 aaattggtacaaattatagttagg--accaaattgagacaatcaattaagttaagagaccgggtgattgaataagc 15825865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 37189619 - 37189699
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcctaaa 81  Q
    ||||||||||||||||||| ||||| |||||||||||| ||| ||||||||| ||  ||| |||||||||||||| |||||    
T  37189619 aaattggtacaaattatagataggggaccaaattgagacaatcaattaagttaagggaccaggtgattgaataagtctaaa 37189699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 18844719 - 18844798
Alignment:
Q  1 aaattggtacaaattatagttaggga-accaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 79  Q
    |||||| ||||||||||||||||||| |||||||||||| ||| ||||||||| ||  | ||||||||||||||||||||    
T  18844719 aaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggatcgggtgattgaataagccta 18844798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 22683217 - 22683140
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcct 78  Q
    |||||| |||||||||||||||||| |||||||||||| ||| ||||||||| |   | |||||||||||||||||||    
T  22683217 aaattgatacaaattatagttaggggaccaaattgagacaatcaattaagttaaaggagcgggtgattgaataagcct 22683140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 37189443 - 37189368
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagcc 77  Q
    |||||||||||||||||||||| |  |||||||||||| ||| ||||||||| ||  ||||||||||||||||||||    
T  37189443 aaattggtacaaattatagttatgagaccaaattgagacaatcaattaagttaag-gaccgggtgattgaataagcc 37189368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 18844535 - 18844484
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagtt 52  Q
    |||||| |||||||||||||||||| |||||||||||||||| |||||||||    
T  18844535 aaattgatacaaattatagttaggggaccaaattgagataatcaattaagtt 18844484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 19056422 - 19056500
Alignment:
Q  1 aaattggtacaaattatagttagggaaccaaattgagataattaattaagttcagtaaccgggtgattgaataagccta 79  Q
    ||||||||||| ||||||||||||| |||||||| | | ||| ||||||||| ||  ||||| ||||||||||||||||    
T  19056422 aaattggtacagattatagttaggggaccaaattaaaacaatcaattaagttaagggaccggatgattgaataagccta 19056500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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