View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_23 (Length: 490)
Name: NF20954_low_23
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 237 - 472
Target Start/End: Original strand, 44228013 - 44228242
Alignment:
| Q |
237 |
tggttctgcttcattaactccaaataatggaggaggaaaagaaatcattagtacagaaacaattgattcaccacaagtacttgacaaagtgaatgccatt |
336 |
Q |
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| T |
44228013 |
tggttctgcttcattaactccaaataatggaggaggaaaagaaataattagtacagaaacaattgattcaccacaagtacttgaaaaagtgaatgccatt |
44228112 |
T |
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| Q |
337 |
cctaaggaaattattatgcctccagtacttcctcagcggcatgcttataacccatatccaccacatatgtactatccacaccctcctccagcagtagcag |
436 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44228113 |
cctaaggaaattattatgcctccagtacttcctcagcagcatgcttataacccatatccaccacatatgtactatccacaccctcctcc------agcag |
44228206 |
T |
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| Q |
437 |
tagcaccaccctatgggttaagctataacacatcat |
472 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
44228207 |
tagcaccaccctatgggttaagctataacacatcat |
44228242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 44227777 - 44227977
Alignment:
| Q |
1 |
aaatcttcaaaatcaaagggtgaaactgaaaatattattaataaggagatcaaggaagatcagaagaatagtactgaacaaattggtgaaagtagtcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44227777 |
aaatcttcaaaatcaaagggtgaaactgaaaatattattaataaggagatcaaggaagatcagaagaatagtactgaacatattggtgaaagtagtcatg |
44227876 |
T |
|
| Q |
101 |
aaggttgcatagatgatgcaggtgatgatggtgaagaagattcagatcacaaagaaggtaataatggtgataaaaataataacaaaagtgagggtggtgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44227877 |
aaggttgcatagatgatgcaggtgatgatggtgaagaagattcagatcacaaagaaggtaataatggtgataaaaataataacaaaagtgagggtggtgc |
44227976 |
T |
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| Q |
201 |
t |
201 |
Q |
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| |
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| T |
44227977 |
t |
44227977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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