View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_24 (Length: 487)
Name: NF20954_low_24
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 41757653 - 41757190
Alignment:
| Q |
1 |
tgcttccaccactcttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttctcaacatatcatagtaagacacaccctttggaagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41757653 |
tgcttccaccactcttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttcttaacatatcatagtaagacacaccctttggaagg |
41757554 |
T |
|
| Q |
101 |
tacttgtgaacttgaagatcttcatctttgtgttcccaatgttcaagtagaacaggcctaacgggcccatgaaccccaccggcgaagaaagccaaaactg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757553 |
tacttgtgaacttgaagatcttcatctttgtgttcccaatgttcaagtagaacaggcctaacgggcccatgaaccccaccggcgaagaaagccaaaactg |
41757454 |
T |
|
| Q |
201 |
atcgcttagatggtgatggcccgccaacaataccatgtattgtaccggtttgaagattggtttctggaatagatacatcctttgcaggcttgaatccctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757453 |
atcgcttagatggtgatggcccgccaacaataccatgtattgtaccggtttgaagattggtttctggaatagatacatcctttgcaggcttgaatccctc |
41757354 |
T |
|
| Q |
301 |
tgatgtgttctcattgcaaagcgctcggattgaatttttgtacaagtttggaactgactttgatgtctctggcccctggaaattaaagagaagcagcnnn |
400 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757353 |
tgatgtgttcgcattgcaaagcgctcggattgaatttttgtacaagtttggaactgactttgatgtctctggcccctggaaattaaagagaagcagcaaa |
41757254 |
T |
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| Q |
401 |
nnnnnnnnnnnnnttgtgtaaaccacaatgcaggtcgcaacatcacggtttttaacgtctcagtgg |
466 |
Q |
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| T |
41757253 |
aagtttgaaaaaat--tgtaaaccacaatgcaggtcgcaacatcacggtttttaacgtctcagtgg |
41757190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 41765736 - 41765381
Alignment:
| Q |
1 |
tgcttccaccactcttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttctcaacatatcatagtaagacacaccctttggaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41765736 |
tgcttccaccactcttggacttgcaacctcccacccactaggacaaagacaaaacttgctttttctcaacatagcatagtaagacacaccctttggaagg |
41765637 |
T |
|
| Q |
101 |
tacttgtgaacttgaagatcttcatctttgtgttcccaatgttcaagtagaacaggcctaacgggcccatgaaccccaccggcgaagaaagccaaaactg |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||| || |
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| T |
41765636 |
tacttgtgaacttgaatatcttcatctttgtgttcccaatgttcaagtagaacattcctaatatccccatgaagcccaccagcgaagaaagccaaaattg |
41765537 |
T |
|
| Q |
201 |
atcgcttagatggtgatggcccgccaacaataccatgtattgtaccggtttgaagattggtttctggaatagatacatcctttgcaggcttgaatccctc |
300 |
Q |
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||| ||||||||||||||| ||||||| || | ||| ||| | |||||| ||| |||| ||||||||||||||||||| ||| | |||||||||||||| |
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| T |
41765536 |
atctcttagatggtgatggtccgccaagaagatcatcaattatgccggttcgaacattgatttctggaatagatacatcttttactggcttgaatccctc |
41765437 |
T |
|
| Q |
301 |
tgatgtgttctcattgcaaagcgctcggattgaatttttgtacaagtttggaactg |
356 |
Q |
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||| ||||| ||||||||| ||| || || ||||| ||||||||||||||||||| |
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| T |
41765436 |
tgaggtgttggcattgcaaaacgcacgaatcgaattcttgtacaagtttggaactg |
41765381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 26973139 - 26973235
Alignment:
| Q |
14 |
cttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttctcaacatatcatagtaagacacaccctttggaaggtacttgtgaa |
110 |
Q |
| |
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|||||||| || ||||| || ||||||||||| |||||||||||||| ||||||| ||| ||||||||||| |||||||||||||| ||||| |||| |
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| T |
26973139 |
cttggactagccacctcataaccactaggacagagacagaacttgctctttctcagcatttcatagtaagaaacaccctttggaagatacttttgaa |
26973235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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