View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_low_25 (Length: 487)

Name: NF20954_low_25
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_low_25
NF20954_low_25
[»] chr1 (6 HSPs)
chr1 (239-469)||(50979600-50979814)
chr1 (23-162)||(50978121-50978260)
chr1 (160-248)||(50979441-50979529)
chr1 (343-404)||(15855804-15855865)
chr1 (271-342)||(50964504-50964575)
chr1 (343-396)||(50948347-50948400)
[»] chr5 (1 HSPs)
chr5 (343-396)||(33631627-33631681)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 239 - 469
Target Start/End: Complemental strand, 50979814 - 50979600
Alignment:
Q  239 gcttaagtttatgtatgattctcaaatggacatcctcttcttcctgaggagtcatatcactcttgagatcttgataccggagtatctgttccggggtcat 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50979814 gcttaagtttatgtatgattctcaaatggacatcctcttcttcctgaggagtcatatcactcttgagatcttgataccggagtatctgttccggggtcat 50979715  T
Q  339 tccttaattttgagatagtgtgctgcctgaaaaaccagataagccaaatgataagacaatataaaaggaaaatttcaaggcataaaacgtaccctnnnnn 438  Q
    ||||||||||| |||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||         
T  50979714 tccttaattttaagatagtgtgctgcctgaaaaaccaga------------taagacaatataaaaggaaaatttcaaggcataaaacgtaccctggggg 50979627  T
Q  439 nnttggttatcctctatagggttctagctta 469  Q
        |||||||||||||||||||||||||||    
T  50979626 ----ggttatcctctatagggttctagctta 50979600  T

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Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 50978121 - 50978260
Alignment:
Q  23 ctttcaccattaacaattagcgtcttttggtgttaaccctccttttcttatgagcaaggggaattggaaattcggagttgacctataaggttaataaggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50978121 ctttcaccattaacaattagcgtcttttggtgttaaccctccttttcttatgagcaaggggaattggaaattcggagttgacctataaggttaataaggg 50978220  T
Q  123 aggcttgaaattcagaactcgaatacccctgatcaattta 162  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50978221 aggcttgaaattcagaactcgaatacccctgatcaattta 50978260  T

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Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 50979441 - 50979529
Alignment:
Q  160 ttaaccttaattgaacttcattaaccacatagttgaacagttagaatctggaagatattgatatttacttaatagctaggcttaagttt 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50979441 ttaaccttaattgaacttcattaaccacatagttgaacagttagaatctggaagatattgatatttacttaatagctaggcttgagttt 50979529  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 15855865 - 15855804
Alignment:
Q  343 taattttgagatagtgtgctgcctgaaaaaccagataagccaaatgataagacaatataaaa 404  Q
    ||||||||||||||||||||||||||||||||||  ||||||| | ||| ||||||||||||    
T  15855865 taattttgagatagtgtgctgcctgaaaaaccagtgaagccaatttatatgacaatataaaa 15855804  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 50964575 - 50964504
Alignment:
Q  271 tcctcttcttcctgaggagtcatatcactcttgagatcttgataccggagtatctgttccggggtcattcct 342  Q
    ||||||||||||||||||||||||||| |||||||||  | ||||||| |||||| ||| |||||| |||||    
T  50964575 tcctcttcttcctgaggagtcatatcattcttgagattgtaataccggtgtatcttttctggggtctttcct 50964504  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 50948400 - 50948347
Alignment:
Q  343 taattttgagatagtgtgctgcctgaaaaaccaga-taagccaaatgataagaca 396  Q
    ||||||||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  50948400 taattttgagatagtgtgctgcctg-aaaaccagagaaagccaaatgataagaca 50948347  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 33631681 - 33631627
Alignment:
Q  343 taattttgagatagtgtgctgcctgaaaaaccaga-taagccaaatgataagaca 396  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  33631681 taattttgagatagtgtgctgcctgaaaaaccagagaaagtcaaatgataagaca 33631627  T

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