View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_26 (Length: 484)
Name: NF20954_low_26
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_26 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0076 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 29568701 - 29568218
Alignment:
| Q |
1 |
gaaaaatgatatctctagcctcttttcaaagccttcaaaaccgattgaagaaactgccaaggccatattgtttcagaaaaagaaaatgcacagcaccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568701 |
gaaaaatgatatctctagcctcttttcaaagccttcaaaaccgattgaagaaactgccaaggccatattgtttcagaaaaagaaaatgcacagcaccaaa |
29568602 |
T |
|
| Q |
101 |
acccgaaagcagtgaacaacgacagcataattgcaaaaatagagactggaaagacgtcgtttgaagaagagtactgaatgattaaaattctaacgaaaat |
200 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568601 |
acccgaaagcagtgaacaacaacagcacaattgcaaaaatagagactggaaagacgtcgtttgaagaagagtactgaatgattaaaattctaacgaaaat |
29568502 |
T |
|
| Q |
201 |
aaacgcaactaagaaaacacgtttcgagcaaaagtagatcaggatggcttcctagcacactgcacataattaacaaatacatgtattagcacaagtccat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29568501 |
aaacgcaactaagaaaacacgtttcgagcaaaagtagatcaggatggcttcctagcacactgcacataattaacaaatacatgtattagcacaagtcatt |
29568402 |
T |
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| Q |
301 |
aatcaaataagattagtttccaacaaatccagaatcggaatcatttaatcttagaacttacgttggagtaagcagctgatctgaacttcttgattccacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568401 |
aatcaaataagattagtttccaacaaatccagaatcggaatcatttaatcttagaacttacgttggagtaagcagctgatctgaacttcttgattccacc |
29568302 |
T |
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| Q |
401 |
gtttggacgaacgtattcaatagtgtagccgaggggagcttcgtaaaataacgattcactactactggacttcttcttgcctcc |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29568301 |
gtttggacgaacgtattcaatagtgtagccgaggggagcttcgtaaaataacgattcactactactggacttcttcttggctcc |
29568218 |
T |
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Target: scaffold0076 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 356 - 451
Target Start/End: Complemental strand, 3863 - 3768
Alignment:
| Q |
356 |
acttacgttggagtaagcagctgatctgaacttcttgattccaccgtttggacgaacgtattcaatagtgtagccgaggggagcttcgtaaaataa |
451 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||| |||| ||||||||||||||||| ||||| |
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| T |
3863 |
acttacgttggagtaagcagctgatctgaacttcttgattccaccgttaggacgaatgtcttcaatgctgtatccgaggggagcttcgtagaataa |
3768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 363534 - 363578
Alignment:
| Q |
1 |
gaaaaatgatatctctagcctcttttcaaagccttcaaaaccgat |
45 |
Q |
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|||||| | |||||| |||||||||||| |||||||||||||||| |
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| T |
363534 |
gaaaaaagttatctcaagcctcttttcatagccttcaaaaccgat |
363578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5903401 - 5903445
Alignment:
| Q |
1 |
gaaaaatgatatctctagcctcttttcaaagccttcaaaaccgat |
45 |
Q |
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|||||| | |||||| |||||||||||| |||||||||||||||| |
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| T |
5903401 |
gaaaaaagttatctcaagcctcttttcatagccttcaaaaccgat |
5903445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5911802 - 5911758
Alignment:
| Q |
1 |
gaaaaatgatatctctagcctcttttcaaagccttcaaaaccgat |
45 |
Q |
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|||||| | |||||| |||||||||||| |||||||||||||||| |
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| T |
5911802 |
gaaaaaagttatctcaagcctcttttcatagccttcaaaaccgat |
5911758 |
T |
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