View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_27 (Length: 479)
Name: NF20954_low_27
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Original strand, 21019220 - 21019677
Alignment:
| Q |
17 |
atgtttgattaggtaacagtcggttttggtggagtttagtggcagggggagcttttggcaggcagcagcacctgttgtgtggtctggcacggctgctgtg |
116 |
Q |
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| T |
21019220 |
atgtttgattaggtaacagtcggttttggtggagttttgtggcagggggagcttttggcaggcagcagcacctgttgtgtggtctggcacggctgctgtg |
21019319 |
T |
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| Q |
117 |
ctgctgttaactgtttttggtggctggcagtatggttttgttgctgcagattgtcctggtgcggtgctgttctgttagtttggagctttgccttgtaact |
216 |
Q |
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| T |
21019320 |
ctgctgttatctgtttttggtggctggcagtatggttttgttgctgcagattgtgctggtgcggtgctgttctgttagtttggagctttgccttgtaact |
21019419 |
T |
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| Q |
217 |
gctttgtagnnnnnnnnngggttgggtgtgtagtgtaagggttgccctgtactactgata---ggggccttggctgtttgttcttttcgttttcggctcc |
313 |
Q |
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| T |
21019420 |
gctttgtagtttttttttgggttgggtgtgtagtgtaagggttgccctgtactactgatacgtggggccttggctgtttgttcttttcgttttcggctcc |
21019519 |
T |
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| Q |
314 |
attcttctcttcttgagagttttggatgcattaataatatttgctattataaaaaatatatgtttgcagctttcacatcacggtgaataatcttaggagg |
413 |
Q |
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| T |
21019520 |
attcttctcttcttgagagttttggatgcattaataatatttgctattaaaaaaaaaatatgtttgcagctttcacatcacggtgaataatcttaggagg |
21019619 |
T |
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| Q |
414 |
gtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattcttc |
471 |
Q |
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| T |
21019620 |
gtcataactataatgcaagtaagcaatccccctggcagatcccactgcaatattcttc |
21019677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 371 - 467
Target Start/End: Complemental strand, 1435974 - 1435881
Alignment:
| Q |
371 |
atatgtttgcagctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatatt |
467 |
Q |
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| T |
1435974 |
atatatttgcagctttcacatcacggtgaataatcttagg---gtcacaactataatgcaagtaagcaatccccctggcagatcccaacgcaatatt |
1435881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 371 - 471
Target Start/End: Complemental strand, 1429364 - 1429267
Alignment:
| Q |
371 |
atatgtttgcagctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattctt |
470 |
Q |
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| T |
1429364 |
atatatttgcagctttcacatcacgatgaataatcttagg---gtcacagtgatcatgcaagtaagcaagccctctggcagatcccagtgcaatattctt |
1429268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 371 - 471
Target Start/End: Complemental strand, 1448797 - 1448700
Alignment:
| Q |
371 |
atatgtttgcagctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattctt |
470 |
Q |
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| T |
1448797 |
atatatttgcagctttcacatcacgatgaataatcttagg---gtcacaatgatcatgcaagtaagcaagccccctggcagctcctagcgcaatattctt |
1448701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 471
Target Start/End: Complemental strand, 1441382 - 1441296
Alignment:
| Q |
382 |
gctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattcttc |
471 |
Q |
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| T |
1441382 |
gctttcacatcacgatgaataatcttagg---gtcacaatgatcatgcaagtaagcaagccccctggcagctcccagcgcaatattcttc |
1441296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 471
Target Start/End: Complemental strand, 1455542 - 1455456
Alignment:
| Q |
382 |
gctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattcttc |
471 |
Q |
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|||||||||||||| ||||||| ||||||| |||||| || |||||||||||| | |||| |||||| |||||| ||||||||||| |
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| T |
1455542 |
gctttcacatcacgatgaataaccttagga---tcacaatgatcatgcaagtaagccagccccttggcagctcccagcccaatattcttc |
1455456 |
T |
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