View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_29 (Length: 476)
Name: NF20954_low_29
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 23 - 466
Target Start/End: Original strand, 10201952 - 10202395
Alignment:
| Q |
23 |
cgcgaggctgttgcttggagcctacgcatttcaaaatgtcctcgaattaacttgacaatcattagatttttgttgtcgtctaaattagaaaatgaacaaa |
122 |
Q |
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| T |
10201952 |
cgcgaggctgttgcttggagcctacgcatttcaaaatgccctcgaattaacttgacaatcattagatttttgttgtcgtctaaattagaaaatgaacaaa |
10202051 |
T |
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| Q |
123 |
ttgataaaagtggagtacaatctaaggaaaaagagattttaatgtcgttgtctggggaagaaactgcgaacgatgagattgacaataacttcatggttga |
222 |
Q |
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| T |
10202052 |
ttgataaaagtggagtacaatctaaggaaaaagagattttaatgtcgttgtccggggaagagactgcgaatgatgagattgacaataacttcatggttga |
10202151 |
T |
|
| Q |
223 |
tttctataacaggcatgtcgcctcgggaaaaattggatatgtagaaaattttgtgaagaatggaagacaaacagttgaatgtttgaaagagattggtgac |
322 |
Q |
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| T |
10202152 |
tttttataacaggcatgtcgcttcgggaaaaattggatatgtagaaaattttgtgaagaatggaagacaaacagttgaatgtttgaaagagattggtgac |
10202251 |
T |
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| Q |
323 |
atatactctttgtttatagttggaaagggtggtagaggaaatagttcactaacaatagatatgagtgattgggaggaatgtccagaacttggatcagttg |
422 |
Q |
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| T |
10202252 |
atatactctttgtttatagttggaaagggtggtagaggaaatagttcactaacaatagatatgagtgattgggaggaatgtccagaacttggatcagttg |
10202351 |
T |
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| Q |
423 |
gtgatattttagcttcttcagattttgatattcatggctctgtg |
466 |
Q |
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| T |
10202352 |
gtgatattttagcttcttcagattttgatattcatggttctgtg |
10202395 |
T |
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Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 26 - 465
Target Start/End: Original strand, 51741157 - 51741593
Alignment:
| Q |
26 |
gaggctgttgcttggagcctacgcatttcaaaatgtcctcgaattaacttgacaatcattagatttttgttgtc---gtctaaattagaaaatgaacaaa |
122 |
Q |
| |
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|||||| | |||||||||||| | ||||||||||| ||||| ||||| |||||||||| |||||||| ||||| |||| | | | || ||||| | |
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| T |
51741157 |
gaggctatagcttggagcctaagaatttcaaaatgccctcgcattaatctgacaatcatcagattttttttgtcttcgtctttgtcacataaagaacata |
51741256 |
T |
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| Q |
123 |
ttgataaaagtggagtacaatctaaggaaaaagagattttaatgtcgttgtctggggaagaaactgcgaacgatgagattgacaataacttcatggttga |
222 |
Q |
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| T |
51741257 |
ttga---aagtggagtacaatatgatgaaaaagaaattttaatgtctttatcaggggaagagactgtgaa---tgagattgacaatacttttatggttga |
51741350 |
T |
|
| Q |
223 |
tttctataacaggcatgtcgcctcgggaaaaattggatatgtagaaaattttgtgaagaatggaagacaaacagttgaatgtttgaaagagattggtgac |
322 |
Q |
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||| ||||||||| |||| || || ||| | ||||||||||| ||||| |||||||| |||||| ||||||||| |||| ||||||||||||||| ||| |
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| T |
51741351 |
tttttataacaggtatgtggcttcaggacagattggatatgtggaaaagtttgtgaaagatggaacacaaacagtggaatctttgaaagagattggggac |
51741450 |
T |
|
| Q |
323 |
atatactctttgtttatagttggaaagggtggtagaggaaatagttcactaacaatagatatgagtgattgggaggaatgtccagaacttggatcagttg |
422 |
Q |
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| ||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||| | |||| |
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| T |
51741451 |
ttgtactctttgtttatagtaggaagaggtggtagaggaaatagttcattaacaataggtatgagtgattgggaagaatgtccagaacttggaacggttg |
51741550 |
T |
|
| Q |
423 |
gtgatattttagcttcttcagattttgatattcatggctctgt |
465 |
Q |
| |
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||||| | || ||||||||||| |||||||||||||| ||||| |
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| T |
51741551 |
gtgatgtcttggcttcttcagactttgatattcatggttctgt |
51741593 |
T |
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