View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20954_low_3 (Length: 908)
Name: NF20954_low_3
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20954_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 656; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 12 - 731
Target Start/End: Original strand, 2561559 - 2562278
Alignment:
| Q |
12 |
aggagcagagattcttgaaatttcatttatcaattagcaaatagtacttctctcccatggtgcatttttggagattttaacgatatccttcatgcacatg |
111 |
Q |
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||||| ||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2561559 |
aggagaagagattcttggaatttcattcgtcaattagcaaatagtacttctctgccatggtgcatttttggagattttaacgatatccttcatgcacatg |
2561658 |
T |
|
| Q |
112 |
aaaagaaggggagaacagtccgtccattctggttgataaatggctaaagatgagctattcataatgcaggtttgattgatattaaccttgatgggaatcc |
211 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
2561659 |
aaaagaaggggagaacagtccgtccatcctggttgataaatggctaaagaagagctattcatgatgcaggtttgattgatattaaccttgatgggtatcc |
2561758 |
T |
|
| Q |
212 |
ttacacttggttcaagagtttgggtacaaatagagcggtggaggagagacttgaccaagtgttagcaaatgaagcatggtttaacctctcccccaatgtg |
311 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2561759 |
ttacacttggttcaagagtttgggtacagatagagcggtggaggagagacttgaccgagtgttagcaaatgaagcatggtttaacctcttccccaatgtg |
2561858 |
T |
|
| Q |
312 |
tcgttggataacttagttgcaccgacatctgatcattatcccattcttcttactcgagtttctacggttcgttctaataaaactcgaaaaaatttcaggt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2561859 |
tcgttggataacttagttgcaccgacatctgatcattatcccattcttcttactcgagttcctacggttcgttctaataaaactcgaaaaaatttcaggt |
2561958 |
T |
|
| Q |
412 |
ttgaaaatgcttggaggatcgaaccaagtttgggtgatgtggtgaagtctagttggcagcaacacaatgaaggaaatgttattttcaaattggaagtttt |
511 |
Q |
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| T |
2561959 |
ttgaaaatgcttggaggatcgaaccaagtttgggtgatgtggtgaagtctagttggcagcaacacaatgaaggaaatgttattttcaaattggaagtttt |
2562058 |
T |
|
| Q |
512 |
acattaagatattaggaaatattctacttcaagttgttctacatcccataactaatcaagtacaaaaagcttctaatgaaagaaaataattgttataaaa |
611 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2562059 |
acattaagatattaggaaatattctactacaagttgttctacatcccatagctaatcaagtaaaaaaagcttctaatgaaagaaaataattgttataaaa |
2562158 |
T |
|
| Q |
612 |
aagctggttgaagcctttgacattattgccaccaacacttgcttacaccttttagtcttctaatttcctgtgaatagaataagtaacgtaaactactttt |
711 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2562159 |
aagctggttgaagcctttgacattattgccaccaacacttgcttacaccttttagtcttctaatttcctgtgaatagaataagtaacgtaaactactttt |
2562258 |
T |
|
| Q |
712 |
caatttcaacttcaatcaag |
731 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2562259 |
caatttcaacttcaatcaag |
2562278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 770 - 893
Target Start/End: Original strand, 2562447 - 2562570
Alignment:
| Q |
770 |
tatatatatttagtaaaattcaatacctgaaagttaagcctgccttcataatgatatcaactctggcatgaagagacttttgaagcagattagttaccat |
869 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2562447 |
tatatatatttagtaaaattcaatacctgaaagttaagcctgccttcataatgatatcaactctggcatgaagagacttttgaagcagattagttaccat |
2562546 |
T |
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| Q |
870 |
ttctcttacctttcctcttattat |
893 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
2562547 |
ttctcttacctttcctcttattat |
2562570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 505 - 557
Target Start/End: Original strand, 2568090 - 2568142
Alignment:
| Q |
505 |
aagttttacattaagatattaggaaatattctacttcaagttgttctacatcc |
557 |
Q |
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|||||||||| |||| | ||||||||||||||||||||||||||||||||||| |
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| T |
2568090 |
aagttttacactaagttgttaggaaatattctacttcaagttgttctacatcc |
2568142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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