View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_low_31 (Length: 474)

Name: NF20954_low_31
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_low_31
NF20954_low_31
[»] chr4 (21 HSPs)
chr4 (21-462)||(10460371-10460812)
chr4 (122-355)||(8443438-8443671)
chr4 (21-359)||(10467892-10468223)
chr4 (27-373)||(10482016-10482356)
chr4 (122-365)||(8447638-8447881)
chr4 (161-359)||(10464115-10464316)
chr4 (176-359)||(10475053-10475239)
chr4 (161-462)||(10571299-10571597)
chr4 (139-367)||(6392662-6392893)
chr4 (178-366)||(6388082-6388270)
chr4 (219-363)||(10493520-10493666)
chr4 (134-251)||(53774797-53774914)
chr4 (406-462)||(10553811-10553867)
chr4 (415-453)||(8437399-8437437)
chr4 (136-209)||(837775-837848)
chr4 (24-80)||(6388347-6388403)
chr4 (404-454)||(8447902-8447952)
chr4 (161-355)||(10553569-10553763)
chr4 (408-461)||(6392580-6392633)
chr4 (137-242)||(11981682-11981787)
chr4 (32-76)||(53790679-53790723)
[»] chr3 (4 HSPs)
chr3 (134-367)||(25915293-25915526)
chr3 (134-367)||(25901275-25901508)
chr3 (149-255)||(36340068-36340174)
chr3 (387-455)||(25901525-25901593)
[»] chr2 (4 HSPs)
chr2 (117-361)||(25376921-25377165)
chr2 (407-461)||(25376854-25376908)
chr2 (188-251)||(1826333-1826395)
chr2 (158-251)||(18913577-18913670)
[»] chr1 (1 HSPs)
chr1 (138-349)||(50645485-50645696)
[»] chr7 (18 HSPs)
chr7 (149-323)||(26256660-26256834)
chr7 (138-242)||(22070077-22070181)
chr7 (134-242)||(22080834-22080942)
chr7 (134-240)||(22100461-22100567)
chr7 (174-248)||(15571931-15572005)
chr7 (134-240)||(22063610-22063716)
chr7 (158-267)||(19597675-19597784)
chr7 (134-255)||(24002152-24002273)
chr7 (153-251)||(16846479-16846577)
chr7 (158-251)||(18952925-18953018)
chr7 (161-266)||(19637240-19637345)
chr7 (134-255)||(24010336-24010457)
chr7 (136-245)||(29874474-29874583)
chr7 (178-239)||(29922033-29922094)
chr7 (32-68)||(18952793-18952829)
chr7 (32-68)||(18982840-18982876)
chr7 (32-68)||(18997486-18997522)
chr7 (28-72)||(21218610-21218654)
[»] scaffold0867 (1 HSPs)
scaffold0867 (134-240)||(4665-4771)
[»] chr6 (5 HSPs)
chr6 (159-363)||(19746715-19746919)
chr6 (149-250)||(33576128-33576229)
chr6 (149-255)||(5978980-5979086)
chr6 (189-251)||(24254477-24254539)
chr6 (161-250)||(33568942-33569031)
[»] chr5 (1 HSPs)
chr5 (158-323)||(23086667-23086832)
[»] scaffold0707 (1 HSPs)
scaffold0707 (161-250)||(5336-5425)
[»] chr8 (2 HSPs)
chr8 (31-79)||(29390397-29390445)
chr8 (311-351)||(42846724-42846764)


Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 21 - 462
Target Start/End: Complemental strand, 10460812 - 10460371
Alignment:
Q  21 ttcatcatttaccaatatcagtgtatcaccattctcagaaagatataatggtaacaaatccaaccctataaacttctcgaccattgcataatcgcagtag 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  10460812 ttcatcatttaccaatatcagtgtatcaccattctcagaaagatataatggtaacaaatccaaccctataaacttctcaaccattgcataatcacagtag 10460713  T
Q  121 catgaaaagaaactctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttga 220  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  10460712 catgaaaagaaactctgataactaataataaataattgagtccatgactcgtgaactccaaaattcttcatctgtcatatcacaaaatgagttcccttaa 10460613  T
Q  221 aatcataagagaaacaaagacagtccatcaaaaccacaagtgttggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgtatgt 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10460612 aatcataagagaaacaaagacagtccatcaaaaccacaagtgttggctgataacgtggcacctcatcgaaaccccgaggcaacaacagctgagtgtatgt 10460513  T
Q  321 ctcagaggagagatccaatgaaacaatcacatatttctcaacagtaacactaccgtctttccaacaaaaatcataatttgaatcaaagtaatcgtgaagg 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10460512 ctcagaggagagatccaatgaaacaatcacatatttctcaacagtaacactaccgtctttccaacaaaaatcataatttgaatcaaagtaatcgtgaagg 10460413  T
Q  421 gccaaccagctaatagtaccattcaaatacacaccgttgttc 462  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10460412 gccaaccagctaatagtaccattcaaatacacaccgttgttc 10460371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 122 - 355
Target Start/End: Original strand, 8443438 - 8443671
Alignment:
Q  122 atgaaaagaaactctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaa 221  Q
    ||||||| ||| |||||||||||||  |||||||| || |||| ||||||||||||||||||| |||||||||||| || ||| ||||||||| ||||||    
T  8443438 atgaaaataaattctgataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatctgccaaataacataatgagttctcttgaa 8443537  T
Q  222 atcataagagaaacaaagacagtccatcaaaaccacaagtgttggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgtatgtc 321  Q
    ||||||||| |||||||||||||||||||||||  ||||||||||||||| || |||| ||| ||| | |||  ||||||||| ||||||||||| || |    
T  8443538 atcataagaaaaacaaagacagtccatcaaaactgcaagtgttggctgatgacatggccccttatcaacaccctgaggcaacagcagctgagtgtgtgac 8443637  T
Q  322 tcagaggagagatccaatgaaacaatcacatatt 355  Q
    || | ||||||||| |  ||||| ||||||||||    
T  8443638 tcggtggagagatcaagcgaaactatcacatatt 8443671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 21 - 359
Target Start/End: Complemental strand, 10468223 - 10467892
Alignment:
Q  21 ttcatcatttaccaatatcagtgtatcaccattctcagaaagatataatggtaacaaatccaaccctataaacttctcgaccattgcataatcgcagtag 120  Q
    ||||| |||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||   || | | |      |||||| |||||||||||    
T  10468223 ttcattatttgccaatattagtgtatcaccattctcagaaagatacaatggtaaaaaatccaaccaagtagagtac------attgcaaaatcgcagtag 10468130  T
Q  121 catgaaaagaaactctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttga 220  Q
    |||||||||||| ||| |||| ||||  |||||||| || |||| |||   ||||||||||||| |||||| |||||||| ||||||| |||| |||       
T  10468129 catgaaaagaaattcttataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaataagtttcctcat 10468030  T
Q  221 aatcataagagaaacaaagacagtccatcaaaaccacaagtgttggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgtatgt 320  Q
    |||||| |  |||||||||||| |||||||||||| || |  ||||||||| ||||| ||||| ||  ||||||||||| | |||||  |||||||||||    
T  10468029 aatcatgaccgaaacaaagacaatccatcaaaaccgcaggctttggctgatgacgtgacaccttat-aaaacctcgaggtagcaacaattgagtgtatgt 10467931  T
Q  321 ctcagaggagagatccaatgaaacaatcacatatttctc 359  Q
    |||||  |||||||| | ||||| ||||||||| |||||    
T  10467930 ctcagttgagagatcaagtgaaagaatcacatacttctc 10467892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 27 - 373
Target Start/End: Complemental strand, 10482356 - 10482016
Alignment:
Q  27 atttaccaatatcagtgtatcaccattctcagaaagatataatggtaacaaatccaaccctataaacttctcgaccattgcataatcgcagtagcatgaa 126  Q
    |||| ||||||| |||||||||||||||| ||||||| | ||||| || |||||||||| | || |||      || ||||| ||||||||||| |||||    
T  10482356 atttgccaatattagtgtatcaccattcttagaaagacacaatggcaaaaaatccaaccatttagact------cccttgcaaaatcgcagtagtatgaa 10482263  T
Q  127 aagaaactctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcat 226  Q
    |||||| |||||||| ||||  |||||||| || |||| |||   ||||||||||||| |||||| |||||||| ||||||| |||| |||   ||||||    
T  10482262 aagaaattctgataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaataagtttcctcataatcat 10482163  T
Q  227 aagagaaacaaagacagtccatcaaaaccacaagtgttggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgtatgtctcaga 326  Q
     |   ||||||||||| |||||||||||| ||||  |||| |||| ||||| ||||| ||  ||||| ||||| | |||||  ||||||||||||||||     
T  10482162 gaccaaaacaaagacaatccatcaaaaccgcaagctttggttgatgacgtgacaccttattaaaaccccgaggtagcaacaattgagtgtatgtctcagt 10482063  T
Q  327 ggagagatccaatgaaacaatcacatatttctcaacagtaacactac 373  Q
     |||||||| | ||||| ||||||||| ||||||  ||||| |||||    
T  10482062 tgagagatcaagtgaaagaatcacatacttctcaggagtaatactac 10482016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 122 - 365
Target Start/End: Original strand, 8447638 - 8447881
Alignment:
Q  122 atgaaaagaaactctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaa 221  Q
    ||||||| ||| |||||||| ||||  |||||||| || |||| ||||| |||||||| |||| |||||||||||| || | |  |||||||| ||||||    
T  8447638 atgaaaataaattctgataattaattttaaataattgaatccaagactcatgaactccgaaatccttcatctgccaaataaaatgatgagttctcttgaa 8447737  T
Q  222 atcataagagaaacaaagacagtccatcaaaaccacaagtgttggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgtatgtc 321  Q
    |||||| || |||||||||||||||||||||||  ||||||| || ||||  | |||||||||||| |||||  ||||||||||||||||||||| || |    
T  8447738 atcatatgaaaaacaaagacagtccatcaaaactgcaagtgtcggatgatgtcatggcacctcatcaaaaccctgaggcaacaacagctgagtgtgtgac 8447837  T
Q  322 tcagaggagagatccaatgaaacaatcacatatttctcaacagt 365  Q
    || | ||||| | | |  |||||||||| |||||  ||||||||    
T  8447838 tcggtggagatagcaagcgaaacaatcatatattcatcaacagt 8447881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 161 - 359
Target Start/End: Complemental strand, 10464316 - 10464115
Alignment:
Q  161 tccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatcaaaaccacaag 260  Q
    |||| ||||| ||| | ||||||| |||||| |||||||| |||||||| ||    | |||||||||| | ||||||||||| |||||||||||||||||    
T  10464316 tccaagactcctgatccccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaaaaccacaag 10464217  T
Q  261 tgttggctgataacgtggcacct---catcgaaacctcgaggcaacaacagctgagtgtatgtctcagaggagagatccaatgaaacaatcacatatttc 357  Q
      |||||||||||  ||||||||   |||| ||||| ||||||| |||||| |||||||| ||||||| ||| ||||  | ||||| |||||||||||||    
T  10464216 ccttggctgataatctggcacctcatcatcaaaaccccgaggcagcaacagttgagtgtacgtctcagtggaaagattgattgaaagaatcacatatttc 10464117  T
Q  358 tc 359  Q
    ||    
T  10464116 tc 10464115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 176 - 359
Target Start/End: Complemental strand, 10475239 - 10475053
Alignment:
Q  176 ctccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatcaaaaccacaagtgttggctgataacg 275  Q
    ||||||||| |||||| |||||||| |||||||| ||    | |||||||||| | ||||||||||| |||||||||||||||||  |||||||||||      
T  10475239 ctccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaaaaccacaagccttggctgataatt 10475140  T
Q  276 tggcacct---catcgaaacctcgaggcaacaacagctgagtgtatgtctcagaggagagatccaatgaaacaatcacatatttctc 359  Q
    ||||||||   |||| ||||| ||||||| ||||||  ||||| | ||||||| ||| ||||  | ||||| |||||||||||||||    
T  10475139 tggcacctcatcatcaaaaccccgaggcagcaacagtcgagtgaacgtctcagtggaaagattgagtgaaagaatcacatatttctc 10475053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 161 - 462
Target Start/End: Original strand, 10571299 - 10571597
Alignment:
Q  161 tccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatcaaaaccacaag 260  Q
    |||| ||||| |||||||||||||   |||| | |||||  |||| |||| ||||||||||||||| | | || ||||||||||  || |||||||||||    
T  10571299 tccaagactcttgaactccaaaatctgtcattttccataaaacaagatgacttcccttgaaatcatgacaaaagcaaagacagttgattaaaaccacaag 10571398  T
Q  261 tgttggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgtatgtctcagaggagagatccaatgaaacaatcacatatttctca 360  Q
     ||||| |||  ||  | |||||| || ||||| ||||| | |||||  | |||||||| |||||  |||||||| | ||||||||||||||||| ||||    
T  10571399 cgttggttgaacacaagacacctcgtcaaaaccccgaggaagcaacaattcagtgtatgactcagttgagagatcaagtgaaacaatcacatattgctca 10571498  T
Q  361 acagtaacactaccgtctttccaacaaaaatcataatttgaatcaaagtaatcgtgaagggccaaccagctaatagtaccattcaaatacacaccgttgt 460  Q
    ||||||| |||||   | ||   || ||  |||||||  ||||  ||||||||| |||||| || |||| |||| |||||| ||||||||||||| ||||    
T  10571499 acagtaatactactaacatt---accaatttcataatcagaatagaagtaatcgcgaagggtcatccagttaattgtaccactcaaatacacaccattgt 10571595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 367
Target Start/End: Complemental strand, 6392893 - 6392662
Alignment:
Q  139 taactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatca---caaaatgagttcccttgaaatcataagagaaac 235  Q
    ||||||||  |||||||| || |||| ||||||||||||||||||| |||||| |||||||| |   ||||||| ||| |||   | |||  | | ||||    
T  6392893 taactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgccatatgatgacaaaatgggtttcctcatagtcaagacaaaaac 6392794  T
Q  236 aaagacagtccatcaaaaccacaagtgttggctgataacgtggcacctca-tcgaaacctcgaggcaacaacagctgagtgtatgtctcagaggagagat 334  Q
    ||||| |||||||||||||||||||| | || ||||||| |||||||| | |  |||| | |||||| |||||  | |||||||||||||| |||||||     
T  6392793 aaagaaagtccatcaaaaccacaagtttcggttgataacatggcaccttattaaaaacattgaggcagcaacaatttagtgtatgtctcagtggagaga- 6392695  T
Q  335 ccaatgaaacaatcacatatttctcaacagtaa 367  Q
    | | ||||| ||||||||||| |||||||||||    
T  6392694 cgagtgaaagaatcacatattgctcaacagtaa 6392662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 366
Target Start/End: Complemental strand, 6388270 - 6388082
Alignment:
Q  178 ccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatcaaaaccacaagtgttggctgataacgtg 277  Q
    ||||||| |||||| |||||||| ||| |||||||| |||  ||||||| | | |||||||||||| |||||||||| |||||  |||||||||||||||    
T  6388270 ccaaaatccttcatttgccatataacagaatgagtttcctcaaaatcatgacaaaaacaaagacagcccatcaaaacaacaagctttggctgataacgtg 6388171  T
Q  278 gcacctcatcgaaacctcgaggcaacaacagctgagtgtatgtctcagaggagagatccaatgaaacaatcacatatttctcaacagta 366  Q
    | |||| ||| ||| | ||||| | ||| |  ||||||||| |||||   || ||||| | ||||| ||||||| ||| || |||||||    
T  6388170 gaaccttatcaaaatcccgaggaagcaaaaattgagtgtatttctcacttgatagatcaagtgaaagaatcacacattgcttaacagta 6388082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 363
Target Start/End: Complemental strand, 10493666 - 10493520
Alignment:
Q  219 gaaatcataagagaaacaaagacagtccatcaaaaccacaagtgtt--ggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgt 316  Q
    |||||||| | | ||| ||||||| |||||||| ||||||||||||  ||  ||||| ||||||  ||| | |||||  ||||||||||||| |||||||    
T  10493666 gaaatcatgacaaaaagaaagacaatccatcaagaccacaagtgttttgggcgataatgtggcagatcaacaaaaccctgaggcaacaacagttgagtgt 10493567  T
Q  317 atgtctcagaggagagatccaatgaaacaatcacatatttctcaaca 363  Q
    ||||||||| ||| ||||| | ||||| ||||||||||| |||||||    
T  10493566 atgtctcagtggaaagatcgactgaaagaatcacatattgctcaaca 10493520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 53774914 - 53774797
Alignment:
Q  134 tctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaa 233  Q
    |||||||||||||  |||  ||| ||||||| ||||| | ||||||||| | |||||| |||||||| |||||||||||| | || ||||||||||| ||    
T  53774914 tctgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataagaaaa 53774815  T
Q  234 acaaagacagtccatcaa 251  Q
    ||||| ||| ||||||||    
T  53774814 acaaatacaatccatcaa 53774797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 462
Target Start/End: Original strand, 10553811 - 10553867
Alignment:
Q  406 aagtaatcgtgaagggccaaccagctaatagtaccattcaaatacacaccgttgttc 462  Q
    ||||||||| |||||| ||||||| |||| |||||||||||||||||||| ||||||    
T  10553811 aagtaatcgcgaagggtcaaccagttaattgtaccattcaaatacacaccattgttc 10553867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 453
Target Start/End: Original strand, 8437399 - 8437437
Alignment:
Q  415 tgaagggccaaccagctaatagtaccattcaaatacaca 453  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  8437399 tgaagggccaaccagttaatagtaccattcaaatacaca 8437437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 837848 - 837775
Alignment:
Q  136 tgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatg 209  Q
    ||||| |||||  |||||||| || |||| ||||| ||||| |||||||||||||| |||||||| ||||||||    
T  837848 tgatagctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaatg 837775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 6388403 - 6388347
Alignment:
Q  24 atcatttaccaatatcagtgtatcaccattctcagaaagatataatggtaacaaatc 80  Q
    ||||||| ||||||||| |||||| |  |||||||||||||||| ||||||||||||    
T  6388403 atcatttgccaatatcaatgtatccctgttctcagaaagatatagtggtaacaaatc 6388347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 8447902 - 8447952
Alignment:
Q  404 caaagtaatcgtgaagggccaaccagctaatagtaccattcaaatacacac 454  Q
    ||||||||| | ||| |||||||||| |||||||||||||||||| |||||    
T  8447902 caaagtaattgcgaaaggccaaccagttaatagtaccattcaaattcacac 8447952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 355
Target Start/End: Original strand, 10553569 - 10553763
Alignment:
Q  161 tccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatcaaaaccacaag 260  Q
    |||| ||||| |||||||||||||   |||| | |||||  |||| |||  ||||||||||||||| | | || |||||||| |  |||||| |||||||    
T  10553569 tccaagactcttgaactccaaaatctgtcattttccataaaacaagatggcttcccttgaaatcatgacaaaagcaaagacaattgatcaaacccacaag 10553668  T
Q  261 tgttggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgtatgtctcagaggagagatccaatgaaacaatcacatatt 355  Q
     |||||||||  ||| | |||||  || ||||| || || | |||||  | |||||||| |||||  |||||||| | |||||||||| ||||||    
T  10553669 cgttggctgaacacgagacaccttgtcaaaaccccggggaagcaacaattcagtgtatgactcagttgagagatcaagtgaaacaatcccatatt 10553763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 461
Target Start/End: Complemental strand, 6392633 - 6392580
Alignment:
Q  408 gtaatcgtgaagggccaaccagctaatagtaccattcaaatacacaccgttgtt 461  Q
    ||||||||||| |||||||||  ||||||||||| ||| ||||||||| |||||    
T  6392633 gtaatcgtgaaaggccaaccaattaatagtaccagtcacatacacaccattgtt 6392580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 11981682 - 11981787
Alignment:
Q  137 gataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaaca 236  Q
    ||||||||||  |||  ||||||||||| ||||| |  |||||||| | |||||| |||||||| ||||||||||||   |  ||||||| ||| |||||    
T  11981682 gataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgagtttgttgaaaatcatgagaaaaaca 11981781  T
Q  237 aagaca 242  Q
    ||||||    
T  11981782 aagaca 11981787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 53790723 - 53790679
Alignment:
Q  32 ccaatatcagtgtatcaccattctcagaaagatataatggtaaca 76  Q
    ||||||||||||| |||||||||||||||||| | ||||| ||||    
T  53790723 ccaatatcagtgtctcaccattctcagaaagacacaatgggaaca 53790679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 134 - 367
Target Start/End: Original strand, 25915293 - 25915526
Alignment:
Q  134 tctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaa 233  Q
    |||||||||||||  | || ||| || |||| ||||| ||||||| ||||| |||||| | |||||| ||||||||  ||||||||||||||| |   ||    
T  25915293 tctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaa 25915392  T
Q  234 acaaagacagtccatcaaaaccacaagtgttggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgtatgtctcagaggagaga 333  Q
    ||||||  |||||||||||||||||| ||||||||||  |||||||||||| || ||||| ||||||| ||||| ||||||||||| ||||| ||| |||    
T  25915393 acaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacaga 25915492  T
Q  334 tccaatgaaacaatcacatatttctcaacagtaa 367  Q
    || |  |||||||||||||||| |||||||||||    
T  25915493 tcaagcgaaacaatcacatattgctcaacagtaa 25915526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 134 - 367
Target Start/End: Original strand, 25901275 - 25901508
Alignment:
Q  134 tctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaa 233  Q
    |||||||||||||  | || ||| || |||| ||||| ||||||| ||||| |||||| | |||||| ||||||||  ||||||||||||||| |   ||    
T  25901275 tctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaa 25901374  T
Q  234 acaaagacagtccatcaaaaccacaagtgttggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgtatgtctcagaggagaga 333  Q
    ||||||  |||||||||||||||||| ||||||||||  |||||||||||| || ||||| ||||| | ||||| ||||||||||| ||||| ||| |||    
T  25901375 acaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacaga 25901474  T
Q  334 tccaatgaaacaatcacatatttctcaacagtaa 367  Q
    || |  |||||||||||||||| |||||||||||    
T  25901475 tcaagcgaaacaatcacatattgctcaacagtaa 25901508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 36340174 - 36340068
Alignment:
Q  149 taaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccat 248  Q
    |||||||  ||||||| ||||| |||  |||||| | ||||||||||||||||||||| | ||||| ||||||||| |  || || ||||| ||||||||    
T  36340174 taaataactgagtccaagactcttgagatccaaactccttcatctgccatatcacaaattcagttctcttgaaatcgtgtgaaaagcaaaggcagtccat 36340075  T
Q  249 caaaacc 255  Q
    || ||||    
T  36340074 cagaacc 36340068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 455
Target Start/End: Original strand, 25901525 - 25901593
Alignment:
Q  387 aaaatcataatttgaatcaaagtaatcgtgaagggccaaccagctaatagtaccattcaaatacacacc 455  Q
    ||| ||||||| |||||  ||||||| |||||| ||||||||| ||||||||||| |||| || |||||    
T  25901525 aaattcataatctgaatagaagtaattgtgaagtgccaaccagttaatagtaccactcaagtaaacacc 25901593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 117 - 361
Target Start/End: Complemental strand, 25377165 - 25376921
Alignment:
Q  117 gtagcatgaaaagaaactctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttccc 216  Q
    |||||||||| |||||||| ||||||||||  |||||||| || |||| ||||| ||||||||||||| |||||||  |||||| ||||||||  || ||    
T  25377165 gtagcatgaagagaaactccgataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatggttttcc 25377066  T
Q  217 ttgaaatcataagagaaacaaagacagtccatcaaaaccacaagtgttggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgt 316  Q
    |  ||||||| | | ||||||||||||||| |||||||||||||| ||||  |  |||  |||||||  |  || |||||||| |  | |||  ||||||    
T  25377065 tccaaatcatgacaaaaacaaagacagtccgtcaaaaccacaagttttggtagtgaacagggcaccttcttaaatcctcgaggtagaatcagtcgagtgt 25376966  T
Q  317 atgtctcagaggagagatccaatgaaacaatcacatatttctcaa 361  Q
    |||||||||  |||||||| |  ||||||||||||||||||||||    
T  25376965 atgtctcagtcgagagatcgagcgaaacaatcacatatttctcaa 25376921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 461
Target Start/End: Complemental strand, 25376908 - 25376854
Alignment:
Q  407 agtaatcgtgaagggccaaccagctaatagtaccattcaaatacacaccgttgtt 461  Q
    |||||| | |||||||||||||| ||||||||||| ||||||||||||| |||||    
T  25376908 agtaattgcgaagggccaaccaggtaatagtaccactcaaatacacaccattgtt 25376854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 1826395 - 1826333
Alignment:
Q  188 tcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatcaa 251  Q
    ||||||||||||| |||||||| |||   |||||||||| ||| ||||||||||||||||||||    
T  1826395 tcatctgccatataacaaaatgggttat-ttgaaatcatgagaaaaacaaagacagtccatcaa 1826333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 18913577 - 18913670
Alignment:
Q  158 gagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatcaa 251  Q
    ||||||| ||||| ||||||||||| | | |||||| |||||| |||||||| |||||| |||||   | ||| ||||| ||||| ||||||||    
T  18913577 gagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttcccctgaaacggtgagaaaaacatagacaatccatcaa 18913670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 138 - 349
Target Start/End: Original strand, 50645485 - 50645696
Alignment:
Q  138 ataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaa 237  Q
    |||||||||  |||||||| || |||| ||||| ||||||||||||| |||||| ||||| || ||||||||||||||||  ||||||| | | | ||||    
T  50645485 ataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatgagttccctcaaaatcatgaaaaatacaa 50645584  T
Q  238 agacagtccatcaaaaccacaagtgttggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgtatgtctcagaggagagatcca 337  Q
    |||  |||| | ||||||  ||||||||||||||||||||| | ||  |  ||||| ||||||| |||||| |||||||||||||| | ||||||||| |    
T  50645585 agattgtcccttaaaaccttaagtgttggctgataacgtggaagcttgtgaaaaccccgaggcagcaacagttgagtgtatgtctcggtggagagatcaa 50645684  T
Q  338 atgaaacaatca 349  Q
     ||||| |||||    
T  50645685 gtgaaagaatca 50645696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 323
Target Start/End: Complemental strand, 26256834 - 26256660
Alignment:
Q  149 taaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccat 248  Q
    |||||||| ||||||| ||||| ||||||||| | | ||||||||||||||  ||||||| | || |||||  ||||| ||| |||||||| || |||||    
T  26256834 taaataattgagtccaagactcttgaactccatactccttcatctgccataaaacaaaatcattttccttggtatcatgagaaaaacaaaggcattccat 26256735  T
Q  249 caaaaccacaagtgttggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgtatgtctc 323  Q
    |||||||  |||   |||||||  |  |||||||||||| |||||| |||||| ||||| |||  ||||||||||    
T  26256734 caaaaccttaagaactggctgaacaaatggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctc 26256660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 22070181 - 22070077
Alignment:
Q  138 ataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaa 237  Q
    |||||||||  | ||||| |||||||| ||||| ||||||||||| | |||||| |||||||| | |||||||||||  |||||||||| ||| ||||||    
T  22070181 ataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttcgtttgaaatcatgagaaaaacaa 22070082  T
Q  238 agaca 242  Q
    |||||    
T  22070081 agaca 22070077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 22080942 - 22080834
Alignment:
Q  134 tctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaa 233  Q
    |||||||||||||  | ||||| |||||||| ||||| ||||||||||| | |||||| |||||||| | ||||||||||   |||||||||| ||| ||    
T  22080942 tctgataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagtttgtttgaaatcatgagaaaa 22080843  T
Q  234 acaaagaca 242  Q
    |||||||||    
T  22080842 acaaagaca 22080834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 22100567 - 22100461
Alignment:
Q  134 tctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaa 233  Q
    |||||||||||||  | |||||  ||||||| ||||| ||||||||||| |||||||| |||||||| | ||||||||||   |||||||||| ||| ||    
T  22100567 tctgataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaa 22100468  T
Q  234 acaaaga 240  Q
    |||||||    
T  22100467 acaaaga 22100461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 15571931 - 15572005
Alignment:
Q  174 aactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccat 248  Q
    ||||||||| | | |||| ||||| || |||||||| |||||||||||||||||||| ||||||||||| |||||    
T  15571931 aactccaaactccctcatttgccacatgacaaaatgggttcccttgaaatcataagaaaaacaaagacaatccat 15572005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 22063716 - 22063610
Alignment:
Q  134 tctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaa 233  Q
    |||||||||||||  | |||||  ||||||| ||||| |||| |||||| | |||||| |||||||| ||||||||||||   |||||||||| | | ||    
T  22063716 tctgataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagtttgtttgaaatcatgaaaaaa 22063617  T
Q  234 acaaaga 240  Q
    |||||||    
T  22063616 acaaaga 22063610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 158 - 267
Target Start/End: Original strand, 19597675 - 19597784
Alignment:
Q  158 gagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatcaaaaccac 257  Q
    ||||||||||||| | |||| |||| | ||||||||||||||| | ||||| |||||| |  ||||||| | | ||||||||  | ||||||||||| ||    
T  19597675 gagtccatgactcttcaacttcaaattccttcatctgccatatgataaaatcagttccatgaaaatcatgacaaaaacaaagggaatccatcaaaacaac 19597774  T
Q  258 aagtgttggc 267  Q
    ||| ||||||    
T  19597775 aagagttggc 19597784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 255
Target Start/End: Complemental strand, 24002273 - 24002152
Alignment:
Q  134 tctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaa 233  Q
    |||||||||||||  ||| |||| ||||||| ||||| ||||||||  | | |||||| |||||||  ||||| | ||||| |||| |||||| | | ||    
T  24002273 tctgataactaatcttaagtaattgagtccaagactcttgaactccgtactccttcatatgccataaaacaaattcagttctcttggaatcatgataaaa 24002174  T
Q  234 acaaagacagtccatcaaaacc 255  Q
    ||||| || |||||||||||||    
T  24002173 acaaataccgtccatcaaaacc 24002152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 16846479 - 16846577
Alignment:
Q  153 taatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatcaa 251  Q
    |||| ||||||| ||||| ||||||||| |||   |||||| |||||| |||| |||||||  ||||| | ||| ||| |||||||| |||||||||||    
T  16846479 taattgagtccaagactcttgaactccataatctgtcatcttccatataacaagatgagtttgcttgacaacatgagaaaaacaaaggcagtccatcaa 16846577  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 18952925 - 18953018
Alignment:
Q  158 gagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatcaa 251  Q
    |||||||||||| || ||||||||| | ||||||||||||||| | |||||| || || |  ||||||| ||| ||||| ||  ||||||||||    
T  18952925 gagtccatgacttgtcaactccaaattccttcatctgccatatgataaaatgggtcccatgaaaatcatgagaaaaacatagggagtccatcaa 18953018  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 19637240 - 19637345
Alignment:
Q  161 tccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatcaaaaccacaag 260  Q
    |||| ||||| ||||||||||| | |||||| |||||||| | ||||| |||||| || ||||||| ||| || |||||  |||||| ||| || |||||    
T  19637240 tccacgactcttgaactccaaattccttcatttgccatataataaaatcagttccattaaaatcatgagacaagcaaagggagtccagcaacacaacaag 19637339  T
Q  261 tgttgg 266  Q
     |||||    
T  19637340 agttgg 19637345  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 255
Target Start/End: Complemental strand, 24010457 - 24010336
Alignment:
Q  134 tctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaa 233  Q
    |||||||||||||  ||| |||| ||||||| ||||| ||||| ||  | | |||||| |||||||  ||||| | ||||| |||| |||||| | | ||    
T  24010457 tctgataactaatcttaagtaattgagtccaagactcttgaaccccgtactccttcatatgccataaaacaaattcagttctcttggaatcatgataaaa 24010358  T
Q  234 acaaagacagtccatcaaaacc 255  Q
    ||||| || |||||||||||||    
T  24010357 acaaataccgtccatcaaaacc 24010336  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 29874583 - 29874474
Alignment:
Q  136 tgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaac 235  Q
    |||||||||||  ||| |||| ||||||| || || | ||| ||||| |||||||| |||||||| |  |||| |||| ||||| ||  |||||| ||||    
T  29874583 tgataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataatgaaatcagtttccttgtaacaataagaaaaac 29874484  T
Q  236 aaagacagtc 245  Q
    ||||||||||    
T  29874483 aaagacagtc 29874474  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 29922033 - 29922094
Alignment:
Q  178 ccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaag 239  Q
    ||||| ||||||||||||||||| ||||||| |||| | ||| || ||||||| ||||||||    
T  29922033 ccaaatttcttcatctgccatataacaaaatcagtttctttgtaagcataagaaaaacaaag 29922094  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 18952793 - 18952829
Alignment:
Q  32 ccaatatcagtgtatcaccattctcagaaagatataa 68  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  18952793 ccaatattagtgtatcaccattctcagaaagacataa 18952829  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 18982840 - 18982876
Alignment:
Q  32 ccaatatcagtgtatcaccattctcagaaagatataa 68  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  18982840 ccaatattagtgtatcaccattctcagaaagacataa 18982876  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 18997486 - 18997522
Alignment:
Q  32 ccaatatcagtgtatcaccattctcagaaagatataa 68  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  18997486 ccaatattagtgtatcaccattctcagaaagacataa 18997522  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 21218610 - 21218654
Alignment:
Q  28 tttaccaatatcagtgtatcaccattctcagaaagatataatggt 72  Q
    ||||| |||| || |||||||||||||||||||||||| ||||||    
T  21218610 tttacaaataccactgtatcaccattctcagaaagatacaatggt 21218654  T

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Target: scaffold0867 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 4665 - 4771
Alignment:
Q  134 tctgataactaataataaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaa 233  Q
    |||||||||||||  | |||||  ||||||| ||||| ||||||||||| |||||||| |||||||| | ||||||||||   |||||||||| ||| ||    
T  4665 tctgataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaa 4764  T
Q  234 acaaaga 240  Q
    |||||||    
T  4765 acaaaga 4771  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 159 - 363
Target Start/End: Original strand, 19746715 - 19746919
Alignment:
Q  159 agtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatcaaaaccaca 258  Q
    |||||| ||||| ||||||||||| |||||||| |||||||| ||||| | ||||||||||||||| |  || || ||||| |||||||||| |||   |    
T  19746715 agtccaagactcttgaactccaaacttcttcatttgccatataacaaattcagttcccttgaaatcgtgcgaaaagcaaaggcagtccatcagaacatga 19746814  T
Q  259 agtgttggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgtatgtctcagaggagagatccaatgaaacaatcacatatttct 358  Q
    || ||||||||| |  |||| || ||||| |||||    |||| ||| |  || |||||||||||||  || ||||| |  |||||||||||| ||| ||    
T  19746815 agagttggctgaaagtgtgggacttcatcaaaaccaaatggcagcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgct 19746914  T
Q  359 caaca 363  Q
    |||||    
T  19746915 caaca 19746919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 33576229 - 33576128
Alignment:
Q  149 taaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccat 248  Q
    |||||||  ||||||| ||||| ||||||||||| | |||||||  |||||| ||||| | ||||||||| ||||| |  || |||||||| ||||||||    
T  33576229 taaataactgagtccaagactcttgaactccaaactccttcatcatccatataacaaattcagttcccttaaaatcgtgcgaaaaacaaaggcagtccat 33576130  T
Q  249 ca 250  Q
    ||    
T  33576129 ca 33576128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 5979086 - 5978980
Alignment:
Q  149 taaataatcgagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccat 248  Q
    |||||||  ||||||| ||||| || |||||||| | ||||||| ||||||| ||||| |  |||| |||||||||||  || || |||||||| |||||    
T  5979086 taaataactgagtccaagactcttggactccaaactccttcatcagccatataacaaattcggttctcttgaaatcatgcgaaaagcaaagacaatccat 5978987  T
Q  249 caaaacc 255  Q
    || ||||    
T  5978986 cagaacc 5978980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 24254477 - 24254539
Alignment:
Q  189 catctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatcaa 251  Q
    |||||||||||| ||||||||||||| ||||| ||  | ||| |||||||| |||||||||||    
T  24254477 catctgccatataacaaaatgagttctcttgatatagtgagaaaaacaaaggcagtccatcaa 24254539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 33569031 - 33568942
Alignment:
Q  161 tccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatca 250  Q
    |||| ||||||||||||||||| |  ||||||| |||||| ||||| | ||| | ||||||||| |  || ||||||| |||||||||||    
T  33569031 tccaagactcgtgaactccaaactcattcatcttccatatgacaaattcagtcctcttgaaatcgtgcgaaaaacaaaaacagtccatca 33568942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 158 - 323
Target Start/End: Complemental strand, 23086832 - 23086667
Alignment:
Q  158 gagtccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatcaaaaccac 257  Q
    ||||||| ||||| ||||||||||| | ||||||||||||||| ||||| | | |   ||| |||||||  || || ||||| |||||| ||| |||       
T  23086832 gagtccaagactcttgaactccaaactccttcatctgccatataacaaattcaatcgtcttaaaatcatgcgaaaagcaaaggcagtccttcagaacatg 23086733  T
Q  258 aagtgttggctgataacgtggcacctcatcgaaacctcgaggcaacaacagctgagtgtatgtctc 323  Q
    ||| | |||||||||   |||||||||||| |||||| |||||| ||||| |||  ||||||||||    
T  23086732 aagagatggctgatattctggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctc 23086667  T

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Target: scaffold0707 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 5425 - 5336
Alignment:
Q  161 tccatgactcgtgaactccaaaattcttcatctgccatatcacaaaatgagttcccttgaaatcataagagaaacaaagacagtccatca 250  Q
    |||| ||||||||||||||||| |  ||||||| |||||| ||||| | ||| | ||||||||| |  || ||||||| |||||||||||    
T  5425 tccaagactcgtgaactccaaactcattcatcttccatatgacaaattcagtcctcttgaaatcgtgcgaaaaacaaaaacagtccatca 5336  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 29390445 - 29390397
Alignment:
Q  31 accaatatcagtgtatcaccattctcagaaagatataatggtaacaaat 79  Q
    |||||||||||||||||||||||||||  || || |||||| |||||||    
T  29390445 accaatatcagtgtatcaccattctcaataacatgtaatggcaacaaat 29390397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 42846724 - 42846764
Alignment:
Q  311 gagtgtatgtctcagaggagagatccaatgaaacaatcaca 351  Q
    ||||||||||||||  ||||||||||||||||| |||||||    
T  42846724 gagtgtatgtctcaatggagagatccaatgaaagaatcaca 42846764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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