View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_low_36 (Length: 426)

Name: NF20954_low_36
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_low_36
NF20954_low_36
[»] chr7 (4 HSPs)
chr7 (18-369)||(5177274-5177625)
chr7 (149-325)||(8552609-8552785)
chr7 (149-325)||(8305858-8306034)
chr7 (364-416)||(5178403-5178455)
[»] chr8 (10 HSPs)
chr8 (147-350)||(5174907-5175110)
chr8 (24-351)||(5203924-5204260)
chr8 (39-345)||(5193689-5193995)
chr8 (21-339)||(6230359-6230683)
chr8 (159-328)||(1797164-1797332)
chr8 (145-339)||(5183491-5183685)
chr8 (146-339)||(5170705-5170898)
chr8 (18-130)||(1797340-1797452)
chr8 (373-416)||(5194817-5194860)
chr8 (373-416)||(5199227-5199270)
[»] chr4 (2 HSPs)
chr4 (160-325)||(49610961-49611126)
chr4 (157-205)||(10202876-10202924)
[»] chr6 (2 HSPs)
chr6 (153-263)||(1180938-1181048)
chr6 (151-273)||(1186313-1186435)


Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 5177274 - 5177625
Alignment:
Q  18 atccaagaggtatatatagatgccccgtatcttgagaaattgtgtttttgtcccgatgattttttcgcatcatataagattggtttcgacagatgccgaa 117  Q
    ||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||    
T  5177274 atccaggaggtatatattgatgccccgtatcttgagaaattgcgtttttgtcccgatgattttttcgcaccatataagattggtttcgatagatgccaaa 5177373  T
Q  118 atttgaaatatttgtctctggagagttgtattatcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacag 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5177374 atttgaaatatttgtctctggagagttgtattatcgcaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacag 5177473  T
Q  218 ttgcactatgtctgagaagattaatatttcaagtgttcaacttaaggtgttggagatatctttttgttctgacatgaaggaggtcaacattgatgctcca 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5177474 ttgcactatgtctgagaagattaatatttcaagtgttcaacttaaggtgttggagatatctttttgttctgacatgaaggagatcaacattgatgctcca 5177573  T
Q  318 aatctattatcgtctgtatattacggtgttggtgctggtagttcagacccta 369  Q
    ||||||||||||| |||||||||| ||||||||  |||||||||||||||||    
T  5177574 aatctattatcgtttgtatattacagtgttggttgtggtagttcagacccta 5177625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 149 - 325
Target Start/End: Complemental strand, 8552785 - 8552609
Alignment:
Q  149 tatcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacagttgcactatgtctgagaagattaatatttca 248  Q
    ||||||| ||||||||||||||||| ||||| | ||||| |||||||||||||| ||| |||| | ||  ||||| |||||||||| |||||||||||||    
T  8552785 tatcacagacaaatggtttcttgaattgttttcgaaattccctttccttgagagattgaaatttgtcaaatgcacaatgtctgagacgattaatatttca 8552686  T
Q  249 agtgttcaacttaaggtgttggagatatctttttgttctgacatgaaggaggtcaacattgatgctccaaatctatt 325  Q
    |||||||||||||||||||||||| |||||  |||   | ||||||| |||||||||||||||||||||||||||||    
T  8552685 agtgttcaacttaaggtgttggagttatctggttgccataacatgaaagaggtcaacattgatgctccaaatctatt 8552609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 149 - 325
Target Start/End: Original strand, 8305858 - 8306034
Alignment:
Q  149 tatcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacagttgcactatgtctgagaagattaatatttca 248  Q
    ||||||| ||||||||||||||||| |||||   |||||  ||||||||||||| ||| |||| | ||  ||||| |||||||||| |||||||||||||    
T  8305858 tatcacagacaaatggtttcttgaattgtttttgaaattcgctttccttgagagattgaaatttgtcaaatgcacaatgtctgagacgattaatatttca 8305957  T
Q  249 agtgttcaacttaaggtgttggagatatctttttgttctgacatgaaggaggtcaacattgatgctccaaatctatt 325  Q
    |||||||||||||||||||||||| |||||  |||   | ||||||| |||||||||||||||||||||||||||||    
T  8305958 agtgttcaacttaaggtgttggagttatctcattgccataacatgaaagaggtcaacattgatgctccaaatctatt 8306034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 5178403 - 5178455
Alignment:
Q  364 accctaaaggagcattcatcgaggtaccgtatgtcattgtctcccatgttcat 416  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178403 accccaaaggagcattcatcgaggtaccgtatgtcattgtctcccatgttcat 5178455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 147 - 350
Target Start/End: Original strand, 5174907 - 5175110
Alignment:
Q  147 attatcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacagttgcactatgtctgagaagattaatattt 246  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||    
T  5174907 attatcaccgacaaatggtttcttgaactgtttcctaaatttcctttccttgagagtttgaaattggacaattgcactatgtccgagaagattaatattt 5175006  T
Q  247 caagtgttcaacttaaggtgttggagatatctttttgttctgacatgaaggaggtcaacattgatgctccaaatctattatcgtctgtatattacggtgt 346  Q
    |||||||||||||||||||||||||| ||| |  ||||||| || |||||||||||||||||||||| ||||||||||||| || |||||||| ||||||    
T  5175007 caagtgttcaacttaaggtgttggagctatttgattgttctaacttgaaggaggtcaacattgatgcgccaaatctattattgtgtgtatattgcggtgt 5175106  T
Q  347 tggt 350  Q
    ||||    
T  5175107 tggt 5175110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 24 - 351
Target Start/End: Original strand, 5203924 - 5204260
Alignment:
Q  24 gaggtatatatagatgccccgtatcttgagaaattgtgtttttgtcccgatgattttttcgcatcatataagattggtttcgacagatgccgaaatttga 123  Q
    ||||| ||||| |||||||||| |||||||||||| |||| |||||| | |||||||  |||| | | |||||||| ||| || || |||| ||||||||    
T  5203924 gaggtttatattgatgccccgtgtcttgagaaattttgttattgtcctggtgattttgacgcaccgtttaagattgattttgataggtgccaaaatttga 5204023  T
Q  124 aatattt---------gtctctggagagttgtattatcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattgga 214  Q
    |||||||         |||| || ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| |    
T  5204024 aatatttagacttgttgtctttgaagagtagtattatcacagacaaatggtttcttgaactgttttcaaaatttcctttccttgagagtttgaagttgaa 5204123  T
Q  215 cagttgcactatgtctgagaagattaatatttcaagtgttcaacttaaggtgttggagatatctttttgttctgacatgaaggaggtcaacattgatgct 314  Q
    || ||| |  ||||  |||| ||||||||||||||||||||||||||||||||||||| |||||  ||||||| || ||||||||||||||||||| |||    
T  5204124 caattgtaggatgttcgagaggattaatatttcaagtgttcaacttaaggtgttggagttatctaattgttctaacttgaaggaggtcaacattgacgct 5204223  T
Q  315 ccaaatctattatcgtctgtatattacggtgttggtg 351  Q
    |||||||||||||||| ||||| ||| |||| |||||    
T  5204224 ccaaatctattatcgtgtgtattttatggtggtggtg 5204260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 39 - 345
Target Start/End: Original strand, 5193689 - 5193995
Alignment:
Q  39 gccccgtatcttgagaaattgtgtttttgtcccgatgattttttcgcatcatataagattggtttcgacagatgccgaaatttgaaatatttgtctctgg 138  Q
    ||||||| |||||||||||| | || |||||| | | |||||  || | ||| |||||||| ||| || || |||| ||||||||||||||||||||||     
T  5193689 gccccgtgtcttgagaaattattttattgtcctggttattttgacgaaccatttaagattgattttgataggtgccaaaatttgaaatatttgtctctga 5193788  T
Q  139 agagttgtattatcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacagttgcactatgtctgagaagat 238  Q
     |||   |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||  || || ||| | |||| |||    
T  5193789 tgagagatattatcactgacaaatggtttctcgaactgtttccaaaatttcctttccttgagagtttgaaattgaacaactgtacaatggccgagaggat 5193888  T
Q  239 taatatttcaagtgttcaacttaaggtgttggagatatctttttgttctgacatgaaggaggtcaacattgatgctccaaatctattatcgtctgtatat 338  Q
    | |||||||||||| ||||||||||||||||| | |||||  ||||||| || ||||||||||||||||||||||||||||||||||||| | |||||||    
T  5193889 tgatatttcaagtgatcaacttaaggtgttggggttatctaattgttctaacttgaaggaggtcaacattgatgctccaaatctattatcatgtgtatat 5193988  T
Q  339 tacggtg 345  Q
     ||||||    
T  5193989 cacggtg 5193995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 21 - 339
Target Start/End: Original strand, 6230359 - 6230683
Alignment:
Q  21 caagaggtatatatagatgccccgtatcttgagaaattgtgtttttgtcccgatgattttttcgcatcatataagattggtttcgacagatgccgaaatt 120  Q
    |||||||| ||||| ||| |||||| ||| ||||||||  ||| |||||| | | |||||  |||| ||| |||||||| ||| || ||||||| |||||    
T  6230359 caagaggtttatattgattccccgtctctcgagaaattacgttattgtcctggttattttgacgcaccatttaagattgattttgatagatgccaaaatt 6230458  T
Q  121 tgaaatattt------gtctctggagagttgtattatcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattgga 214  Q
    ||||||||||      || |||||| ||| ||||||||||  |||||||||||||||||||||||  |||||||| |||||||||||||||| |||||||    
T  6230459 tgaaatatttagacttgtgtctggacagtggtattatcaccgacaaatggtttcttgaactgtttagaaaatttcgtttccttgagagtttgaaattgga 6230558  T
Q  215 cagttgcactatgtctgagaagattaatatttcaagtgttcaacttaaggtgttggagatatctttttgttctgacatgaaggaggtcaacattgatgct 314  Q
       ||| || ||| | |||| ||||||||||||||||||||||||||||||||||||| |||||  ||||||| || |||||||||| || |||||||||    
T  6230559 tgattgtacaatggccgagaggattaatatttcaagtgttcaacttaaggtgttggagttatctgattgttctaacttgaaggaggttaatattgatgct 6230658  T
Q  315 ccaaatctattatcgtctgtatatt 339  Q
    |||||||||||||||| ||||||||    
T  6230659 ccaaatctattatcgtgtgtatatt 6230683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 159 - 328
Target Start/End: Complemental strand, 1797332 - 1797164
Alignment:
Q  159 aaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacagttgcactatgtctgagaagattaatatttcaagtgttcaac 258  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||| | ||||||    ||| || ||| | || |||||||||||||||||||||||||    
T  1797332 aaatggtttcttgaactgtttccaaaatttcatttcctagagagtt-gaaattgggttattgtacaatggccgacaagattaatatttcaagtgttcaac 1797234  T
Q  259 ttaaggtgttggagatatctttttgttctgacatgaaggaggtcaacattgatgctccaaatctattatc 328  Q
    |||||||||||||| |||||  ||||||| || |||||||||||||||||||||||||||||||||||||    
T  1797233 ttaaggtgttggagttatctcattgttctaacttgaaggaggtcaacattgatgctccaaatctattatc 1797164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 145 - 339
Target Start/End: Original strand, 5183491 - 5183685
Alignment:
Q  145 gtattatcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacagttgcactatgtctgagaagattaatat 244  Q
    ||||||||||  | ||||||||||||||||||||| || ||| ||||||||||||||||||  ||||| |   ||| |  ||| |||||| |||||||||    
T  5183491 gtattatcaccgataaatggtttcttgaactgttttcagaatatcctttccttgagagtttaaaattgcattattgtaaaatggctgagacgattaatat 5183590  T
Q  245 ttcaagtgttcaacttaaggtgttggagatatctttttgttctgacatgaaggaggtcaacattgatgctccaaatctattatcgtctgtatatt 339  Q
    ||||||||||||||||||||||||| || |||||  ||||||| || |||||||||| || ||||||||||||||||||||||| | ||||||||    
T  5183591 ttcaagtgttcaacttaaggtgttgaagttatctaattgttctaacttgaaggaggttaatattgatgctccaaatctattatcatgtgtatatt 5183685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 146 - 339
Target Start/End: Original strand, 5170705 - 5170898
Alignment:
Q  146 tattatcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacagttgcactatgtctgagaagattaatatt 245  Q
    |||||| ||| ||||||||||||| || || |||| |||||| |||||||||||||| ||| ||||| | | |||||  ||||| || | ||||||||||    
T  5170705 tattattacagacaaatggtttctcgatctctttcgaaaattccctttccttgagaggttgaaattgcaaaattgcaaaatgtccgaaaggattaatatt 5170804  T
Q  246 tcaagtgttcaacttaaggtgttggagatatctttttgttctgacatgaaggaggtcaacattgatgctccaaatctattatcgtctgtatatt 339  Q
    ||||||||||||||||||||||||||| ||||   ||| | | || |||||||||||  |||||||||||| |||||||| || | ||||||||    
T  5170805 tcaagtgttcaacttaaggtgttggagttatcacattgctataacttgaaggaggtcggcattgatgctcccaatctattgtcatgtgtatatt 5170898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 1797452 - 1797340
Alignment:
Q  18 atccaagaggtatatatagatgccccgtatcttgagaaattgtgtttttgtcccgatgattttttcgcatcatataagattggtttcgacagatgccgaa 117  Q
    ||||| ||||||||||| ||||||||||||||||||||| | |||| |||||| |||||||||||  || |||||||||||| ||| || ||||||| ||    
T  1797452 atccaggaggtatatattgatgccccgtatcttgagaaactttgttattgtccggatgattttttttcaccatataagattgattttgatagatgccaaa 1797353  T
Q  118 atttgaaatattt 130  Q
    |||||||||||||    
T  1797352 atttgaaatattt 1797340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 416
Target Start/End: Original strand, 5194817 - 5194860
Alignment:
Q  373 gagcattcatcgaggtaccgtatgtcattgtctcccatgttcat 416  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  5194817 gagcattcattgaggtaccgtatgtcattgtctcccatgttcat 5194860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 416
Target Start/End: Complemental strand, 5199270 - 5199227
Alignment:
Q  373 gagcattcatcgaggtaccgtatgtcattgtctcccatgttcat 416  Q
    |||||||||| | |||||| ||||||||||||||||||||||||    
T  5199270 gagcattcattgtggtaccatatgtcattgtctcccatgttcat 5199227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 160 - 325
Target Start/End: Original strand, 49610961 - 49611126
Alignment:
Q  160 aatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacagttgcactatgtctgagaagattaatatttcaagtgttcaact 259  Q
    |||||||||||||  |||||   ||||| |||||||||||||  ||| |||| | || |||||| |||||||||| ||||||||||||||||||||||||    
T  49610961 aatggtttcttgatttgtttttgaaattccctttccttgagatattgaaatttgccaattgcacaatgtctgagacgattaatatttcaagtgttcaact 49611060  T
Q  260 taaggtgttggagatatctttttgttctgacatgaaggaggtcaacattgatgctccaaatctatt 325  Q
    ||||||||||||| |||||  |||   | || |||||||||| |||||||||||||||||||||||    
T  49611061 taaggtgttggagttatctcattgccttaacttgaaggaggttaacattgatgctccaaatctatt 49611126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 10202876 - 10202924
Alignment:
Q  157 acaaatggtttcttgaactgtttccaaaatttcctttccttgagagttt 205  Q
    |||| |||||||||||| ||||||| ||||| ||||| |||||||||||    
T  10202876 acaagtggtttcttgaattgtttccgaaattcccttttcttgagagttt 10202924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 1180938 - 1181048
Alignment:
Q  153 acaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacagttgcactatgtctgagaagattaatatttcaagtg 252  Q
    |||||||| |||||||||||| ||||||| ||||| ||||| |||||||||||| ||||  ||| ||| |  ||| || |||||||| ||||||||||||    
T  1180938 acaaacaagtggtttcttgaattgtttccgaaattcccttttcttgagagtttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtg 1181037  T
Q  253 ttcaacttaag 263  Q
    ||| |||||||    
T  1181038 ttcgacttaag 1181048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 273
Target Start/End: Original strand, 1186313 - 1186435
Alignment:
Q  151 tcacaaacaaatggtttcttgaactgtttccaaaatttcctttccttgagagtttggaattggacagttgcactatgtctgagaagattaatatttcaag 250  Q
    |||| ||||| |||||||||||| ||||||| ||||| || || |||||||||||| |||| || | |||    ||  |||||| |||| ||||||||||    
T  1186313 tcaccaacaagtggtttcttgaattgtttccgaaattcccctttcttgagagtttgaaattagaaaattgtgaaattcctgagaggattgatatttcaag 1186412  T
Q  251 tgttcaacttaaggtgttggaga 273  Q
    ||||| |||||||  ||||||||    
T  1186413 tgttcgacttaagaggttggaga 1186435  T

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